Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., acidobacterial duplicated orphan permease from Alteromonas macleodii MIT1002

 Score =  327 bits (837), Expect = 6e-94
 Identities = 177/441 (40%), Positives = 274/441 (62%), Gaps = 32/441 (7%)

Query: 3   VILNLAWKSLLNRKATALLTVLTVAIAVVLLLGVERIRTQAKESFANTISGTDLIVGGRS 62
           ++  +A +SL  RK TA+LT+L++ I++ LLL V+ IRTQ K SF  T+SG DLIVG  S
Sbjct: 1   MLSTIAIESLKRRKTTAILTLLSITISISLLLCVDIIRTQVKTSFTRTVSGVDLIVGAPS 60

Query: 63  GQVNLLLYSVFRIGNATNNIDWKSYQEFSQHPAVKWAIPISLGDSHKGFRVLGTNHSYFE 122
           GQ+NLLL SVF IG  T  I++KS      +  V W IP+SLGD+H+GFRV+GT +S+F+
Sbjct: 61  GQLNLLLSSVFNIGTPTKGIEYKSIAALQSNKQVSWLIPLSLGDTHRGFRVVGTTNSFFD 120

Query: 123 HYRYGSKQPLTLSQGREFNGLFETVIGADVAQALGYQVGSQIIIAHGISDVGFSRHDNLP 182
           H++YG  Q L ++ G  F     TVIGAD+A++LGY+VG +III+HG+  V F+ HD+ P
Sbjct: 121 HFKYGDMQSLEMAAGSTFTQPLSTVIGADIAKSLGYKVGDKIIISHGLGSVSFNNHDDHP 180

Query: 183 FTVVGILAPTGTPVDKTVHVSLEAIEAIHVG-WESGANLGHQPSAEQLAQRD-------- 233
           FT+ GI+  TGTPVDK V+V+L+ +E  H G   S  ++  + SA++  + +        
Sbjct: 181 FTISGIVKKTGTPVDKAVYVTLQGLEEAHTGPKHSPTSMLGRKSADKANEHEHEHEHEHE 240

Query: 234 ---------------FTPKQITAMLVGLKSKIQTFALQRQINDYPQEPLSAIMPGVALHE 278
                          FTP+ ++ +++GLK ++    LQ QIN   +EPL AI+PG+AL E
Sbjct: 241 HDEHTKEHAVYNSEAFTPESVSVVMLGLKHRVTALQLQYQINQSKKEPLMAILPGMALAE 300

Query: 279 LWGMMSVAEQALMAVSVFVVVAGLLGMLSSLLTSLQERRREMSILRAMGARPQHVFALLV 338
           LW +M   E  L+ +S  +V+  L+G+ + LL +++ER +E+++LR +GA P  +  L+ 
Sbjct: 301 LWQIMGNVESLLLGLSGLIVICALIGLATMLLATMRERYQEIAVLRTIGAGPFTLLLLIQ 360

Query: 339 SEASVLTLVGILLGVSVLYLLLALAAPLIASQYGIQIA--LAGLTA--YEWQLLGCVQLA 394
            EA +LT+V   L + ++  L++   P ++S YG+ ++  L G ++      +LGC  L 
Sbjct: 361 IEAMLLTIVSAALSLGLVAGLMSALKPWLSSTYGLFLSSPLFGQSSVIIILLILGCTYL- 419

Query: 395 GIVIGFIPALRAYRQSLSDGM 415
              +   PA+ AYR+ L  G+
Sbjct: 420 ---VSLFPAVAAYRRGLHAGL 437