Pairwise Alignments

Query, 582 a.a., outer membrane protein assembly factor from Vibrio cholerae E7946 ATCC 55056

Subject, 575 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  322 bits (824), Expect = 3e-92
 Identities = 198/563 (35%), Positives = 294/563 (52%), Gaps = 15/563 (2%)

Query: 28  AVSYADVKLEITGISGAEKDNVEAYLSSIAAQDYSTSLRFQSQLERSMTEALNALGYYHP 87
           A++ +++ + +   + A K N+E Y+  +  +D    LRF    E    +A  ALG+Y P
Sbjct: 20  ALAQSELDVRVKPSNDALKANIEGYIGGVGDRDEEALLRFSRGAEEQARKAAQALGFYQP 79

Query: 88  SIDFTVSE-DNQRLRAAVTLGEVTRLSEVDIVIRGEAEGDRDFQRLIRRSGLRVDAPLNH 146
            I+  V   +N RL   +  GE   L  V I + G A   + F R+   + L+  A LNH
Sbjct: 80  RIESDVKGGNNPRLILTIDPGEPVHLRNVTIRVDGPAADLKAF-RVPVSNDLKSGAVLNH 138

Query: 147 SLYDNLKSGIRNLALQKGYFNGDFQASRLEVIPELNQARVILHFDSGIRYLFGATTVEG- 205
             Y++ K  I+N A + G+F+G F   +L V P+   A + L +DSG RY  G  +  G 
Sbjct: 139 GHYEDAKRLIQNQASRYGFFSGRFTRQKLAVDPQAGVADIELIYDSGPRYTLGKVSFAGD 198

Query: 206 SQIDENRVMSLRPFKQGEPYLVSQVGEFNQNLSNTDWFSSVFVE--PDLSQLDEGRELPI 263
           +  DE  +  + PFK G PY    + E NQNL  + +F  V V+  P  S  D    +P+
Sbjct: 199 TPFDEELLHRMVPFKSGTPYDSELIAELNQNLQASGFFEGVRVDAAPAASTNDI---IPV 255

Query: 264 KVTLAPQARNQLETGLGYSTDVGVRGSLKWKKPWVNSQGHSFDSSFSLSIPEQTITAGYK 323
            V L  +    +  GLG+STDVG RG   W + WVN QGHS+     LS P Q +   Y 
Sbjct: 256 AVRLETRKPRTMGLGLGFSTDVGPRGKANWTRHWVNPQGHSYGWEAELSAPRQNVGLWYD 315

Query: 324 IPLEDALNEYYRIQYGMKHLDKRDTESLESNLSLERHW--QLDGGWHRTVFIRYLLENYR 381
           IPL+  L +  R   G ++ +  +T+++   L+L   W  +L  GW R + ++Y  E YR
Sbjct: 316 IPLDPPLTDKLRFAGGYQNEEIANTDTVSKLLTLGPEWHSKLPSGWTRVISLKYQREEYR 375

Query: 382 QGLQDDNSQFLLPGMTYTRTRTRSNSGLLTWGDKQTITLEYGDPALLSETRVLRLQTGSS 441
            G     S  ++PG++Y+  R+ +       G +     +     L S+T +L       
Sbjct: 376 LGNDSGLSNLVMPGVSYSYLRSDNRIDPHN-GYRLQFDTKVAKEGLGSDTNLLYGTALVK 434

Query: 442 WLRTYARNHRALVRVDGGANLVDEFDQLSPSLRFFAGGDNNLRGYGYKSISPQDASGALT 501
            L T   NHR L R   G +  + +  + PSLRFFAGGD ++RGY Y+++SP++  G   
Sbjct: 435 GLTTLWDNHRFLARAQVGGSATNGYKSVPPSLRFFAGGDQSVRGYEYQTLSPENDRGDRV 494

Query: 502 GAKYIATSSIEYQYRLTGNWWAAMFMDVGDAFN--DNPEWKKGVGTGIRWISPVGPIRLD 559
           G +Y+   S EYQY +   W  A F+D G++FN  D P  K GVG GIRW+SPVGPIRLD
Sbjct: 495 GGRYMVALSAEYQYSIAEKWRIATFIDQGNSFNNLDLPSLKTGVGVGIRWVSPVGPIRLD 554

Query: 560 FAWGLDAAPGDEFKIHFTLGPEL 582
            A  L+   G   ++HF++GPEL
Sbjct: 555 LAHALEDPGG--IRLHFSMGPEL 575