Pairwise Alignments

Query, 582 a.a., outer membrane protein assembly factor from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., autotransporter assembly complex protein TamA from Escherichia coli ECRC62

 Score =  430 bits (1106), Expect = e-125
 Identities = 233/566 (41%), Positives = 346/566 (61%), Gaps = 16/566 (2%)

Query: 27  SAVSYADVKLEITGISGAEKDNVEAYLSSIAAQDYSTSLRFQSQLERSMTEALNALGYYH 86
           SAV+ A+V+L++ G+SG  + NV A LS+I + + +   RF+++++ ++ E L ALGYY 
Sbjct: 18  SAVA-ANVRLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRARVDDAIREGLKALGYYQ 76

Query: 87  PSIDFTV----SEDNQRLRAAVTLGEVTRLSEVDIVIRGEAEGDRDFQRLIRRSGLRVDA 142
           P+I+F +     +  Q L A VT G    +   D+V+RG A  D+D+ +L+      +  
Sbjct: 77  PTIEFDLRPPPKKGRQVLIAKVTPGVPVLIGGTDVVLRGGARTDKDYLKLLDTRPA-IGT 135

Query: 143 PLNHSLYDNLKSGIRNLALQKGYFNGDFQASRLEVIPELNQARVILHFDSGIRYLFGATT 202
            LN   Y+N K  + ++AL+KGYF+ +F  ++L +   L++A   + ++SG RY FG  T
Sbjct: 136 VLNQGDYENFKKSLTSIALRKGYFDSEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVT 195

Query: 203 VEGSQIDENRVMSLRPFKQGEPYLVSQVGEFNQNLSNTDWFSSVFVEPDLSQLDEGRELP 262
            EGSQI +  + +L PFK+G+ Y    + E N+ LS T WF+SV V P   +  E + LP
Sbjct: 196 FEGSQIRDEYLQNLVPFKEGDEYESKDLAELNRRLSATGWFNSVVVAPQFDKARETKVLP 255

Query: 263 IKVTLAPQARNQLETGLGYSTDVGVRGSLKWKKPWVNSQGHSFDSSFSLSIPEQTITAGY 322
           +   ++P+  N +ETG+GYSTDVG R    WKKPW+NS GHS  +S S+S PEQT+   Y
Sbjct: 256 LTGVVSPRTENTIETGVGYSTDVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSY 315

Query: 323 KIP-LEDALNEYYRIQYGMKHLDKRDTESLESNLSLERHWQLDGGWHRTVFIRYLLENYR 381
           K+P L++ L +YY +Q G K  D  DTES  + L   R+W L  GW R + +R+ L+++ 
Sbjct: 316 KMPLLKNPLEQYYLVQGGFKRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFT 375

Query: 382 QGLQDDNSQFLLPGMTYTRTRTRSNSGLL-TWGDKQTITLEYGDPALLSETRVLRLQTGS 440
           QG   + +    PG+  +RTR+R   GL+ TWGD Q  +++Y + A  S+      Q  +
Sbjct: 376 QGEITNTTMLFYPGVMISRTRSR--GGLMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQN 433

Query: 441 SWLRTYARNHRALVRVDGGANLVDEFDQLSPSLRFFAGGDNNLRGYGYKSISPQDASGAL 500
            W+RT    HR + R   G     +FD++ P LRFFAGGD ++RGY YKSI+P+ A+G L
Sbjct: 434 VWIRTLYDRHRFVTRGTLGWIETGDFDKVPPDLRFFAGGDRSIRGYKYKSIAPKYANGDL 493

Query: 501 TGAKYIATSSIEYQYRLTGNWWAAMFMDVGDAFND--NPEWKKGVGTGIRWISPVGPIRL 558
            GA  + T S+EYQY +TG WW A+F+D G+A +D    ++K G G G+RW SPVGPI+L
Sbjct: 494 KGASKLITGSLEYQYNVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKL 553

Query: 559 DFAWGLDAAPGDEFKIHF--TLGPEL 582
           DFA  +  A  DE  + F   LGPEL
Sbjct: 554 DFA--VPVADKDEHGLQFYIGLGPEL 577