Pairwise Alignments
Query, 1254 a.a., DUF490 domain-containing protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1362 a.a., Inner membrane component of TAM transport system from Variovorax sp. SCN45
Score = 118 bits (295), Expect = 4e-30
Identities = 125/534 (23%), Positives = 216/534 (40%), Gaps = 72/534 (13%)
Query: 783 SVTFGWDKAQFSAQLAKNQLQASWLLDATDNGDLSGNIQIADVRAEQKT----------M 832
S G +A+ + ++AS D+ G ++ +I D R +Q+ +
Sbjct: 839 STPAGLRQAELRLDAQGDAVRASLTWDSERAGKINADI---DTRVQQRAGGWQWAPDAPL 895
Query: 833 LGSLNLTTFNLDFLQPLIGELSEAKSNINADVQFHGPMLHPQLNGEIAINDIRVKGEISP 892
G++ + NL L ++A G P+ NG + + + ++ +
Sbjct: 896 GGTIKASLPNLGVWSMLAPPGWRIAGTLDAAATLSGNRAVPRWNGTLGADKLALRAPVEG 955
Query: 893 VDVQSGQVSLKFNGYQAVLN-------------------------ADIQTTDGLLEVDGD 927
+D++ G++ NG + + ++ ++ G L GD
Sbjct: 956 LDLRDGRLRASLNGERVEITEFTLKGGAGSSARIAGQSGNRSTAASEARSDGGTLSATGD 1015
Query: 928 ADWQQIEDWRLKARVHAPSMMVELPPMVRVKVIPDLTLTMQPQL--ARVTGNIALPWGRI 985
W R+ + L +VR L+ +Q +L + T L R
Sbjct: 1016 LSWGPASGTASGVRMAMQGQLRALRVLVRTDRQVTLSGDLQAKLDNGQFTVRGKLKTDRA 1075
Query: 986 VVEELPPSAIGVSKDQILLNA--DFEPLTDKERIPFSVESD-------------VNVQIG 1030
V+ +A + D ++ +A D E +R ++ VN +G
Sbjct: 1076 VIILPDETAPSLGSDVVVRSAAKDREAAEAAKRESERADAQAAKPQTAKPPDIVVNFDLG 1135
Query: 1031 DDFQLSAFGLQGNLVGRLNV--AQKDKGPFILGEVNIRNGQYRSFGQDLQIKEGKILMNG 1088
DDF + G+ L G L + + + P I GEV GQYR++GQ L ++ G NG
Sbjct: 1136 DDFAVQGRGITTRLEGDLEIRSTRLNAPPRITGEVKTVKGQYRAYGQQLDVETGVARFNG 1195
Query: 1089 PVDQPYLAITAIRNPNNTQDGVVAGVRVSGPSDEPSLTIFSEPAMPQANALSYLLRGQNI 1148
P D P L I AIR PN +Q AGV+++G + P + ++SEPA+ A LS+++ G+
Sbjct: 1196 PFDNPALDILAIR-PNLSQR---AGVQITGTAQSPRVKLYSEPALSDAETLSWVILGR-A 1250
Query: 1149 DGEAGGNAMTTTLIGLSLAQSGKL-----VGEIGQAFGVQDLQLDTAGSGDD---SQVTV 1200
+GG + LSL GK+ G + FG+ +L GSG D S VT+
Sbjct: 1251 SATSGGESALLQQAALSLL--GKIGGSGSGGSLASRFGLDELGFKGPGSGGDLRESAVTL 1308
Query: 1201 SGYILPGLQVKYGVGIFNSVGEFTVRYRLMQDLYLEAVSGVDSAVDLLYQFEFN 1254
+ + Y I + G + Y L L L +G S +DL+Y +++
Sbjct: 1309 GKRLSKDFYITYERSIGGTFGTLFIFYDLTTKLTLRGQAGQTSGLDLIYTVKYD 1362
Score = 30.8 bits (68), Expect = 8e-04
Identities = 129/590 (21%), Positives = 217/590 (36%), Gaps = 122/590 (20%)
Query: 269 LDAQLNAQ--ATLSQDYPIQLELRSQVH--LADFKGQTLSLAAQGSLADLTVQANLDSLA 324
+DA LN + A L++D+ I + + V L + + L +AA+ A+ + A +++
Sbjct: 218 IDASLNGRVKAPLAEDHDIDVLAEATVKGTLTGTEAR-LQVAAELKPAEESPDAPMEARL 276
Query: 325 QAQLNSHFNLLDADIPFDLQLSQVKAQWPMLGEGDYHVEVPELSIQGSLAKYQFALQGAL 384
QAQ+ D DL+ + WP PE + G++ A G
Sbjct: 277 QAQIAPWLPQPVIDAKADLRNVDASSLWP---------GAPETRLTGTVELTPDADTGPA 327
Query: 385 QGKDLPNVSLALQGHGNLDEVALQSLK----------------VDTLGGLVTGNAVANWK 428
K ++ ++ G + +++ ++ ++ V GG + +A W
Sbjct: 328 AWKASADIRNSVAGPWDEEKLPVEQVQARVGFDGTSWTIPEATVRAGGGRI--DAAGKWS 385
Query: 429 N-PLNWAARLNLKNIQPGLQWPEAEG-KISGELDT---------SGALTEQGGWQVEVSR 477
P W A+ ++ ++PG + E G +SG L AL +GG
Sbjct: 386 PAPAPWQAQATVRGVRPGALYTELSGAPVSGTLKAEQKESTISFDAALRAEGG----AGS 441
Query: 478 LAIKGVLRDYPLKMLGELSASDVQGQ-GDITLQTKGVSLVHGPNSLTAKGQLSKQWRMSV 536
A+ G D L QGQ D L + + + S+ K Q+ R++
Sbjct: 442 KALPGFALDRAL----------AQGQWKDQVLDLRTLRIEAQRASIDGKLQV----RVAD 487
Query: 537 ELDVPDLSKSLPDAKGKVIGDVLL---RGDLKQPRVKLVLDADSLQWQELGSIGHVTLQG 593
+ LS LP +V G + GD+K + DAD++Q G G
Sbjct: 488 QAGSGKLSLVLPGGSAQVEGRIAPTAGSGDIKAS----IDDADAVQRWVQGLPG----LS 539
Query: 594 NLVPLPEPQGELTLQVRAIQYQDQRIDTVDLKAQGSQRKHEVTLDVTSDLASTSLAMNGR 653
N+ +G L D QG + + L +T+ A G
Sbjct: 540 NVFANASAKGSAKL---------------DANWQGGWQTIQRRLQ-----NATAPAQRG- 578
Query: 654 LRTEPTLRWQGELERMWLNSPQGQWLLQQATALSFDQRTERVTVAAHCWVQGEASLCLEE 713
EPTL+ + R+ L+ P + A + R +A +ASL L+
Sbjct: 579 -TAEPTLKAMLGVPRLDLHLPASE---PGGAATAVQLNGLRAELAGSL---AQASLTLQG 631
Query: 714 EAELGARGETRLAIKQFDFKQLAGVLPKETKLSGGLNGQVWAKW-APKAAPQLQANLELT 772
EA G + T +T+ SGGL G +W A A+ +LQA ++
Sbjct: 632 EATTGTQKIT-----------------IDTRASGGLAGN--DQWRAALASLRLQAQDSVS 672
Query: 773 QGQVTQKLNKSVTFGWDKAQFSAQLAKNQLQASWLLDATDNGDLSGNIQI 822
G L S S A+ ++AS AT G + G ++I
Sbjct: 673 PGSAPWVLELSREVTATIRSTSGNAARLDIEAS-AAAATLRGPVPGTVRI 721
Score = 28.1 bits (61), Expect = 0.005
Identities = 61/287 (21%), Positives = 109/287 (37%), Gaps = 38/287 (13%)
Query: 530 KQWRMSVELDVPDLSKSLPDAKGKVIGDVLLRGDLKQPRVKLVLDADSLQWQELGSIGHV 589
+Q + V++DVP + A + + L G + L+ + + V
Sbjct: 149 QQLALPVDVDVPFRIDEVRWAGPPALQALNLSGSYSYKAAEHALEVKGVDIADGHYSARV 208
Query: 590 TLQGNLVPLPEP-QGELTLQVRAIQYQDQRIDTV-DLKAQGSQRKHEVTLDVTSDLA--- 644
LQG P P L +V+A +D ID + + +G+ E L V ++L
Sbjct: 209 KLQG---PAPMAIDASLNGRVKAPLAEDHDIDVLAEATVKGTLTGTEARLQVAAELKPAE 265
Query: 645 -STSLAMNGRLRTE-------PTLRWQGELER-----MWLNSPQGQWLLQQATALSFDQR 691
S M RL+ + P + + +L +W +P+ + L L+ D
Sbjct: 266 ESPDAPMEARLQAQIAPWLPQPVIDAKADLRNVDASSLWPGAPETR--LTGTVELTPDAD 323
Query: 692 TERVTVAAHCWVQGEASLCLEEEAELGARGETRLAIKQFD----FKQLAGVLPKETKLSG 747
T A ++ + G E +L ++Q F + +P+ T +G
Sbjct: 324 TGPAAWKASADIRNSVA---------GPWDEEKLPVEQVQARVGFDGTSWTIPEATVRAG 374
Query: 748 GLNGQVWAKWAPKAAP-QLQANLE-LTQGQVTQKLNKSVTFGWDKAQ 792
G KW+P AP Q QA + + G + +L+ + G KA+
Sbjct: 375 GGRIDAAGKWSPAPAPWQAQATVRGVRPGALYTELSGAPVSGTLKAE 421