Pairwise Alignments

Query, 330 a.a., thiamine ABC transporter substrate binding subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron) from Variovorax sp. SCN45

 Score = 56.6 bits (135), Expect = 9e-13
 Identities = 82/347 (23%), Positives = 135/347 (38%), Gaps = 37/347 (10%)

Query: 6   TAVALATLCVASAASAAPTLTVYTYDSFAAEWGPAPAIEKAFEAQCGCDLQFVALDDGVS 65
           + +A A L  A++A+ A  L V  +    AE      I  +FE + G  +  + L     
Sbjct: 11  SGLAAALLAGAASAAQAEELVVGIFGGSFAEDSKTCHIA-SFEKKTGAKVA-LKLGSSSQ 68

Query: 66  ILNRLRLEGSNSKADVVLGLDNNLIEEAKQTGLLATHSVDTSKVTLPNGWS------DNT 119
               +R  G  S  DVV  +DN+L  + K   LL T  +D SK+      S      D  
Sbjct: 69  FAASIRATGGKSDFDVVY-IDNSLASQLKNEKLLET--IDKSKLANAAEVSPRALDKDGQ 125

Query: 120 FVPYDYGYFAFVYNKEKLANPPTSLKELVEKRDDLKVIYQDPRTSTPGQGLLLWMKSVYG 179
           +V +  G    VY+ +++  PPTS  +L +   D ++   D  + T G   L+ +  + G
Sbjct: 126 YVVFMTGATVIVYDTKQIKTPPTSWADLAKPEYDGRLAIGD-ISGTSGSQFLMALNRMKG 184

Query: 180 ------DQAPQAWKQLASKTVTVTKGWSEAYSMFLGGEADLVLSYTTSPAYHLIAENDAR 233
                 D    A K +A  +VT+     +  S+F   E    + Y       +  +    
Sbjct: 185 GTLANMDAGFAAIKPIAKSSVTLYTQADQIVSLFERQEIAAAVWYPDRAGSAI--DKGLP 242

Query: 234 FATANFSEGHYLQVEVAAKVKSTKNGELADKFLQFILSNEFQSVIPTGNWMYPVTA---- 289
            A     EG    +      K  K+  LA K++  +LS E Q+      +  PV      
Sbjct: 243 LAIVYPKEGAVGILPALVIPKGAKSPALALKYIDEVLSKEGQTCFAERKYAGPVNTQVKL 302

Query: 290 -------VELPKGFDTLAVPTQSLSFSAQEVAQMRKPWIREWQQALS 329
                  V   + FD L +P        + VA+    W + WQ+ ++
Sbjct: 303 SDKAAKIVPYQQTFDNLWLP------DPEAVAKSLPEWTKRWQREVA 343