Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 264 a.a., Inner membrane ABC transporter permease protein YdcV from Xanthobacter sp. DMC5

 Score = 77.8 bits (190), Expect = 4e-19
 Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 35/253 (13%)

Query: 11  VAAGVA-TFVLAALAALLWQS---------PPFNLNLIWQDAYYRHVTQFSFYQ-----A 55
           +AAG+   F+LA L  +L  S         PP + ++ W  A + +    + +      A
Sbjct: 12  IAAGLMFLFLLAPLLVVLPISFSGDDFMAFPPSSWSVKWYGAIFANSVMMNAFWISLALA 71

Query: 56  FWSTVLSVGLAIPVAHALSQRRFPGRDLLLKLFAMTLVLPVLVAIFGLIAIYGNSGFLAK 115
           F  T LS+G+ +P A+AL + + PG + L  LF+  L+LP +V    L+ ++   G +  
Sbjct: 72  FVVTALSLGIGLPAAYALVRLKPPGAEALSNLFSAPLLLPTIVLGLALLLVFAPMGLIG- 130

Query: 116 TLHSVGFPLPFSIYGLNGILLAHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQK 175
                            G++ AH++  LPYA R+L  +L  +P    +    LG      
Sbjct: 131 --------------SFQGLVAAHLIVTLPYAVRVLSTALANLPLTVEEAAGMLGARPLTV 176

Query: 176 FKWVEWPRLRQQLPHVAGLVFMLCFTSFATVMALGGGPKATTIELAIYQAIKFDFDLQIG 235
           F  V  P +R  L     L F++ F      + +  GP+  T+ +A+Y  +    D Q  
Sbjct: 177 FFRVTLPMMRSGLVSTTALCFLVSFDEVVLSLFM-TGPRLQTLPVAMYNHV----DQQAD 231

Query: 236 ALLAIWQMLLCTL 248
            + A   +LL  L
Sbjct: 232 PMAAAISVLLVVL 244



 Score = 49.7 bits (117), Expect = 1e-10
 Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 10/201 (4%)

Query: 320 FWSAVSHSLQVASLASSLALASGIAMLLTSRALRLKAAHRRANGVEWIATLILVTPGLVV 379
           FW +++ +  V +L+  + L +  A++      RLK     A    + A L+L T    +
Sbjct: 64  FWISLALAFVVTALSLGIGLPAAYALV------RLKPPGAEALSNLFSAPLLLPT----I 113

Query: 380 STGLFLLLRNITDVFRLAYWIVVAVNALMALPYVVKTLSQPMWHLAQQYELLCASLGMSG 439
             GL LLL         ++  +VA + ++ LPY V+ LS  + +L    E     LG   
Sbjct: 114 VLGLALLLVFAPMGLIGSFQGLVAAHLIVTLPYAVRVLSTALANLPLTVEEAAGMLGARP 173

Query: 440 WRRFRLVEWRALRKPLSHAFAIGFLLSMGDLSAIALFGSQDFRTLPLYLYQLLGSYQMDT 499
              F  V    +R  L    A+ FL+S  ++           +TLP+ +Y  +       
Sbjct: 174 LTVFFRVTLPMMRSGLVSTTALCFLVSFDEVVLSLFMTGPRLQTLPVAMYNHVDQQADPM 233

Query: 500 AAVVALAMLIMSVGWFYVIER 520
           AA +++ ++++++    V++R
Sbjct: 234 AAAISVLLVVLTLAVVLVVDR 254