Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 268 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 71.6 bits (174), Expect = 3e-17
 Identities = 70/264 (26%), Positives = 116/264 (43%), Gaps = 31/264 (11%)

Query: 11  VAAGVATFVLAALAALLWQSPPFNLNLI----------------WQDAYYRHVTQFSFYQ 54
           + A V  FV+  L A++W S  F  N I                WQ   +R+    S   
Sbjct: 13  ITAIVLAFVVLPLGAVIWVS--FFANRILSFPATGYTLDWYVRAWQLDSFRNGFITSVET 70

Query: 55  AFWSTVLSVGLAIPVAHALSQRRFPGRDLLLKLFAMTLVLPVLVAIFGLIAIYGNSGFLA 114
           A  +  LS+ L +P + AL + RFPGRD +  L    +V+P +V         G + F+A
Sbjct: 71  ALVAVALSLALGVPASLALVRYRFPGRDAIQTLLLSPMVVPGIVG--------GAALFMA 122

Query: 115 KTLHSVGFPLPFSIYG-LNGILLAHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRW 173
                +   L   I G L G+ +AH L  LP+  RL+  SL  +     +    LG  R 
Sbjct: 123 --FIELEILLDVDISGTLPGLFVAHGLIALPWTVRLVTASLVGMSPSYEEAAQSLGAGRL 180

Query: 174 QKFKWVEWPRLRQQLPHVAGLVFMLCFTSFATVMALGGGPKATTIELAIYQAIKFDFDLQ 233
             F  V  P ++  +   A   F++ F      + L  GP  TT+++A+   ++++ D  
Sbjct: 181 TTFFRVTLPIIKPGIVAAALFSFVISFIDLEKSIFL-VGPGRTTLQIALVSYLEWNLDST 239

Query: 234 IGALLAIWQMLLCTLLTFTLQRFS 257
           + A+  + Q+L+  +L     R++
Sbjct: 240 VAAVATV-QILIIGVLLLVSDRYA 262



 Score = 43.9 bits (102), Expect = 7e-09
 Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 17/206 (8%)

Query: 327 SLQVASLASSLALASGIAMLLTSRALRLKAAHRRANGVEWIATLIL---VTPGLVVSTGL 383
           S++ A +A +L+LA G+   L            R  G + I TL+L   V PG+V    L
Sbjct: 67  SVETALVAVALSLALGVPASLA-------LVRYRFPGRDAIQTLLLSPMVVPGIVGGAAL 119

Query: 384 FLLLRNI-----TDVFRLAYWIVVAVNALMALPYVVKTLSQPMWHLAQQYELLCASLGMS 438
           F+    +      D+      + VA + L+ALP+ V+ ++  +  ++  YE    SLG  
Sbjct: 120 FMAFIELEILLDVDISGTLPGLFVA-HGLIALPWTVRLVTASLVGMSPSYEEAAQSLGAG 178

Query: 439 GWRRFRLVEWRALRKPLSHAFAIGFLLSMGDLSAIALFGSQDFRTLPLYLYQLLGSYQMD 498
               F  V    ++  +  A    F++S  DL            TL + L   L  + +D
Sbjct: 179 RLTTFFRVTLPIIKPGIVAAALFSFVISFIDLEKSIFLVGPGRTTLQIALVSYL-EWNLD 237

Query: 499 TAAVVALAMLIMSVGWFYVIERLFAQ 524
           +       + I+ +G   ++   +A+
Sbjct: 238 STVAAVATVQILIIGVLLLVSDRYAR 263