Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., phosphonate ABC transporter permease from Pseudomonas simiae WCS417

 Score = 84.7 bits (208), Expect = 8e-21
 Identities = 105/469 (22%), Positives = 191/469 (40%), Gaps = 38/469 (8%)

Query: 63  VGLAIPVAHALSQRRFPGRDLLLKLFAMTLVLPVLVAIFGLIAIYGNSGFLAKTLHSVGF 122
           V LA   A+AL +   PG+ +   +  + L+ P ++    L+ ++GN G L   L     
Sbjct: 92  VPLAYLFAYALQRTLIPGKAIWRGMSLLPLMAPSMLPGIALVYLFGNQGMLRGLLSD--- 148

Query: 123 PLPFSIYGLNGILLAHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQKFKWVEWP 182
               +IYG  GI+L  V++  P+A  +LL +L    +      + +G S  + F+ + WP
Sbjct: 149 ----NIYGFWGIVLGEVIYTFPHALMILLSALSLADARLFDAASSMGASPARAFRSITWP 204

Query: 183 RLRQQLPHVAGLVFMLCFTSFATVMALGGGPKATTIELAIYQAIKFDFDLQIGALLAIWQ 242
             RQ +     LVF L  T F   + +GG  +   +E   Y+A+        GAL+ +  
Sbjct: 205 ATRQAVFAAFCLVFTLTITDFGVPVVVGGDYQVLALE--AYKAVVGQQQFGRGALIGM-V 261

Query: 243 MLLCTLLTFTLQRFSHSRPMNSAASKVTERWVRDSWRAKVWDASWIVAACVLVLPPLVMV 302
           +LL  L +F +  +   R  ++ + +     V     +++ DA ++ A  +L+   L++V
Sbjct: 262 LLLPALFSFAVDAWLRRRHGDAMSGRAQ---VFQPAPSRLRDACYL-AIVLLICAVLLLV 317

Query: 303 VLAGLNSKLGKVL---------------TSGDFWSAVSHSLQVASLASSLALASGIAMLL 347
               + S L K                 T+G  W A  +SL +A   + +    G  ++ 
Sbjct: 318 FGMAVYSSLVKFWPYNLSLSLNHYQFEDTAGGGWLAYRNSLTMALCTALI----GSVLIF 373

Query: 348 TSRALRLKAAHRRA--NGVEWIATLILVTPGLVVSTG---LFLLLRNITDVFRLAYWIVV 402
           T   L  K   ++     +  ++ + +  PGLV+  G    F L  N   VF     ++V
Sbjct: 374 TGAYLMEKTKGQKGLNLALRMLSFVPMAVPGLVLGLGYVFFFNLNGNPLHVFYGTMTLLV 433

Query: 403 AVNALMALPYVVKTLSQPMWHLAQQYELLCASLGMSGWRRFRLVEWRALRKPLSHAFAIG 462
                  L     T +  +  L  ++E    SL    +R +  V        L       
Sbjct: 434 VCTIAHYLTTAQMTATTVLRQLDAEFEAAALSLKAPLYRHYLKVTVPICLPALLDIVRYL 493

Query: 463 FLLSMGDLSAIALFGSQDFRTLPLYLYQLLGSYQMDTAAVVALAMLIMS 511
           F+ +M  +SA     S D     + +  +  +  +  AA ++  +L  S
Sbjct: 494 FVSAMTTVSAAIFLYSPDTLLAAVAVLNMDDAGNVGGAAAMSTLILFTS 542