Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 277 a.a., Spermidine/putrescine import ABC transporter permease protein PotB (TC 3.A.1.11.1) from Variovorax sp. SCN45

 Score = 61.6 bits (148), Expect = 3e-14
 Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 15/229 (6%)

Query: 32  PFNLNLIWQDAYYRHVTQFSFYQAFWSTVLSVGLAIPVAHALSQRRFPGRDLLLKLFAMT 91
           P N   ++ D Y+R V   +   A  +T++++ + +P  + L+  R P R  +    A  
Sbjct: 43  PRNYVQVFADPYFREVLSTTLQVAAVTTLIALLVGLPAGYTLA--RMPRRWKMWLTLATI 100

Query: 92  LVLPV--LVAIFGLIAIYGNSGFLAKTLHSVGF-----PLPFSIYGLNGILLAHVLFNLP 144
           L L V  +V   G +A+ GNSG         G       L F+   + G+++  VL   P
Sbjct: 101 LPLMVGNVVRSAGWLALLGNSGLFNAVAQWSGLVREPMQLMFNRPAVVGVMVTIVL---P 157

Query: 145 YASRLLLQSLEAIPSEQHKLCAHLGMSRWQKFKWVEWPRLRQQLPHVAGLVFMLCFTSFA 204
                L   +E IP    +  A+LG   +  F+ V  P+    +     LVF+LC  ++A
Sbjct: 158 LMVMTLASVIEGIPRNVEEAAANLGARPFTVFRRVVLPQAMPGVIAGMSLVFILCMNAYA 217

Query: 205 TVMALGGGPKATTIELAIYQAIKFDFDLQIGALLAIWQMLLCTLLTFTL 253
           T + + GGP+   +   IYQ      +   GA LA   MLL   L   L
Sbjct: 218 TPVLI-GGPRFRMMTPEIYQQFVGLNNWPFGAALAF--MLLAVTLAVVL 263



 Score = 42.7 bits (99), Expect = 2e-08
 Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 22/235 (9%)

Query: 295 VLPPLVMVVLAGLNSKLGKVLTSGDFWSAVSHSLQVASLASSLALASGIAMLLTSRALRL 354
           +  P  ++V A       +V     F   +S +LQVA++ + +AL  G+    T     L
Sbjct: 30  IYTPTELMVEAFTPRNYVQVFADPYFREVLSTTLQVAAVTTLIALLVGLPAGYT-----L 84

Query: 355 KAAHRRANGVEWIATLILVTPGLVVSTGLFLLLRNITDVFR-LAYW-------------- 399
               RR      +AT++ +  G VV +  +L L   + +F  +A W              
Sbjct: 85  ARMPRRWKMWLTLATILPLMVGNVVRSAGWLALLGNSGLFNAVAQWSGLVREPMQLMFNR 144

Query: 400 -IVVAVNALMALPYVVKTLSQPMWHLAQQYELLCASLGMSGWRRFRLVEWRALRKPLSHA 458
             VV V   + LP +V TL+  +  + +  E   A+LG   +  FR V        +   
Sbjct: 145 PAVVGVMVTIVLPLMVMTLASVIEGIPRNVEEAAANLGARPFTVFRRVVLPQAMPGVIAG 204

Query: 459 FAIGFLLSMGDLSAIALFGSQDFRTLPLYLY-QLLGSYQMDTAAVVALAMLIMSV 512
            ++ F+L M   +   L G   FR +   +Y Q +G       A +A  +L +++
Sbjct: 205 MSLVFILCMNAYATPVLIGGPRFRMMTPEIYQQFVGLNNWPFGAALAFMLLAVTL 259