Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 264 a.a., ABC-type spermidine/putrescine transport system, permease component II from Variovorax sp. SCN45

 Score = 64.7 bits (156), Expect = 4e-15
 Identities = 66/262 (25%), Positives = 106/262 (40%), Gaps = 46/262 (17%)

Query: 1   MNRTPQLGFWVAAGVATFVLAALAALLWQS---------PPFNLNLIWQDAYYRHVTQFS 51
           MN+   +     A V  F+LA L  +   +         P    +L W +A + H     
Sbjct: 1   MNKNGPIALAFNALVIVFMLAPLVVVCIVAFTPENTLTIPTTRFSLRWFEAVFAHP---D 57

Query: 52  FYQAFW--------STVLSVGLAIPVAHALSQRRFPGRDLLLKLFAMTLVLPVL---VAI 100
           F Q+FW        S  ++  LA+P   A+++  F GRD L  LF   L++P L   VA+
Sbjct: 58  FMQSFWNSLWLALSSATIATLLAVPAGMAITRYEFAGRDFLNGLFLSPLIVPHLVLGVAL 117

Query: 101 FGLIAIYGNSGFLAKTLHSVGFPLPFSIYGLNGILLAHVLFNLPYASRLLLQSLEAIPSE 160
             L A+ G +G       S G+           +++AH L   PY  RL++ +L      
Sbjct: 118 LRLFALVGGTG-------SFGW-----------LVMAHALIVTPYTLRLVVAALVGFDRS 159

Query: 161 QHKLCAHLGMSRWQKFKWVEWPRLRQQLPHVAGLVFMLCFTSF--ATVMALGGGPKATTI 218
             +    LG S+   F+ +  P +   LP V G   +    SF   T+      P   T+
Sbjct: 160 AEQAALSLGASQATVFRRITLPMI---LPGVTGGWMLAFINSFDEVTMSIFVTAPSTVTL 216

Query: 219 ELAIYQAIKFDFDLQIGALLAI 240
            + +Y       D  + A+ A+
Sbjct: 217 PVRMYMYATESIDPLMAAVSAL 238



 Score = 42.0 bits (97), Expect = 3e-08
 Identities = 43/203 (21%), Positives = 92/203 (45%), Gaps = 10/203 (4%)

Query: 320 FWSAVSHSLQVASLASSLALASGIAMLLTSRALRLKAAHRRANGVEWIATLILVTPGLVV 379
           FW+++  +L  A++A+ LA+ +G+A+       R + A R      +++ LI+  P LV+
Sbjct: 62  FWNSLWLALSSATIATLLAVPAGMAIT------RYEFAGRDFLNGLFLSPLIV--PHLVL 113

Query: 380 STGLFLLLRNITDVFRLAYWIVVAVNALMALPYVVKTLSQPMWHLAQQYELLCASLGMSG 439
              L  L   +        W+V+A +AL+  PY ++ +   +    +  E    SLG S 
Sbjct: 114 GVALLRLFALVGGTGSFG-WLVMA-HALIVTPYTLRLVVAALVGFDRSAEQAALSLGASQ 171

Query: 440 WRRFRLVEWRALRKPLSHAFAIGFLLSMGDLSAIALFGSQDFRTLPLYLYQLLGSYQMDT 499
              FR +    +   ++  + + F+ S  +++      +    TLP+ +Y          
Sbjct: 172 ATVFRRITLPMILPGVTGGWMLAFINSFDEVTMSIFVTAPSTVTLPVRMYMYATESIDPL 231

Query: 500 AAVVALAMLIMSVGWFYVIERLF 522
            A V+  M+ ++     +++R++
Sbjct: 232 MAAVSALMVAVTACAMVLLDRIY 254