Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

 Score = 91.7 bits (226), Expect = 7e-23
 Identities = 105/476 (22%), Positives = 190/476 (39%), Gaps = 32/476 (6%)

Query: 55  AFWSTVLSVGLAIPVAHALSQRRFPGRDLLLKLFAMTLVLPVLVAIFGLIAIYGNSGFLA 114
           AF    + V LA   A AL +   P + L   +  + L+ P ++    L+ ++GN G L 
Sbjct: 88  AFTVAAIVVPLAYLFAFALQRTLIPAKGLWRGISLLPLLAPSMLPAIALVYLFGNQGLLR 147

Query: 115 KTLHSVGFPLPFSIYGLNGILLAHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQ 174
             L         +IYG  GI+L   ++  P+A  +LL +L    +      + +G   W+
Sbjct: 148 GLLSD-------NIYGFWGIVLGEAIYTFPHALMILLSALSLADARLFDAASSMGAGSWR 200

Query: 175 KFKWVEWPRLRQQLPHVAGLVFMLCFTSFATVMALGGGPKATTIELAIYQAIKFDFDLQI 234
            F  + WP  RQ +     LVF L  T F   + +GG  +   +E   Y+A+        
Sbjct: 201 AFTSITWPASRQAVFAAFCLVFTLTITDFGVPVVVGGDYQVLALE--AYKAVVGQQQFGR 258

Query: 235 GALLAIWQMLLCTLLTFTLQRFSHSRPMNSAASKVTERWVRDSWRAKVWDASWIVAACVL 294
           GAL+ +  +LL  L +FT+  +   R   +   +      + S        + ++  C  
Sbjct: 259 GALIGM-VLLLPALFSFTVDAWLRRRQGEAMGGRAQVFEPKPSRGRDACFLTIVLLVCAA 317

Query: 295 VLPPLVMVVLAGLNS----KLGKVL-------TSGDFWSAVSHSLQVA---SLASSLALA 340
           +L  + M V + L +     L   L       T+G  W A  +S+ +A   +L  S+ + 
Sbjct: 318 LLVVIGMAVYSSLVTFWPYNLSLSLRHYMFEDTAGGGWLAYRNSVTMAIGTALIGSIVIF 377

Query: 341 SGIAMLLTSRALRLKAAHRRANGVEWIATLILVTPGLVVSTG---LFLLLRNITDVFRLA 397
           +G  ++  ++  RL       + +  ++ + +  PGLV+  G    F L  N   V    
Sbjct: 378 TGAYLMEKTQGQRL-----LNHALRLLSFIPMAVPGLVLGLGYVFFFNLNGNPLHVLYGG 432

Query: 398 YWIVVAVNALMALPYVVKTLSQPMWHLAQQYELLCASLGMSGWRRFRLVEWRALRKPLSH 457
             ++V       L     T +  +  L  ++E    SL    ++ F  V        L  
Sbjct: 433 MGLLVVCTIAHYLTTAQMTATTALRQLDGEFEAAALSLKAPLYKHFLRVTVPICLPALLD 492

Query: 458 AFAIGFLLSMGDLSAIALFGSQDFRTLPLYLYQLLGSYQMDTAAVVALAMLIMSVG 513
                F+ +M  +SA     S D     + +  +  +  +  AA ++  +L+ S G
Sbjct: 493 IIRYLFVSAMTTVSAAIFLYSPDTLLAAIAVLNMDDAGNVGGAAAMSTLILLTSAG 548



 Score = 61.6 bits (148), Expect = 8e-14
 Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 13/242 (5%)

Query: 288 IVAACVLVLPPLVMVVLAGLNSKLGK---------VLTSGDFWSAVSHSLQVASLASSLA 338
           ++   + VL PL+ +   G + + G+         + TS  F   + +SL VA   +++ 
Sbjct: 36  LILLVLAVLMPLLAIFWRGFSGEAGQGGGLLAARELFTSASFHWLLGNSLSVAFTVAAIV 95

Query: 339 --LASGIAMLLTSRALRLKAAHRRANGVEWIATLILVTPGLVVSTGLFLLLRNITDVFRL 396
             LA   A  L    +  K   R  + +  +A  +L    LV   G   LLR +      
Sbjct: 96  VPLAYLFAFALQRTLIPAKGLWRGISLLPLLAPSMLPAIALVYLFGNQGLLRGLLSDNIY 155

Query: 397 AYWIVVAVNALMALPYVVKTLSQPMWHLAQQYELLCASLGMSGWRRFRLVEWRALRKPLS 456
            +W +V   A+   P+ +  L   +     +     +S+G   WR F  + W A R+ + 
Sbjct: 156 GFWGIVLGEAIYTFPHALMILLSALSLADARLFDAASSMGAGSWRAFTSITWPASRQAVF 215

Query: 457 HAFAIGFLLSMGDLSAIALFGSQDFRTLPLYLYQ-LLGSYQMDTAAVVALAMLIMSVGWF 515
            AF + F L++ D     + G  D++ L L  Y+ ++G  Q    A++ + +L+ ++  F
Sbjct: 216 AAFCLVFTLTITDFGVPVVVGG-DYQVLALEAYKAVVGQQQFGRGALIGMVLLLPALFSF 274

Query: 516 YV 517
            V
Sbjct: 275 TV 276