Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 269 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score = 64.3 bits (155), Expect = 5e-15
 Identities = 55/261 (21%), Positives = 112/261 (42%), Gaps = 26/261 (9%)

Query: 4   TPQLGFWVAAGVATFVLAALAALLWQS-PPFNLNLIWQDAYYRH-----VTQFSFYQAFW 57
           T  +G ++   +   VL +  +  W   PP    L W   ++ +         S   A  
Sbjct: 20  TGLIGLFLLLPIVFIVLLSFGSSQWLVFPPPGWTLKWYGQFFSNPDWMNAAAASLKVAVL 79

Query: 58  STVLSVGLAIPVAHALSQRRFPGRDLLLKLFAMTLVLPVLVAIFGLIAIYGNSGFLAKTL 117
           +T+ +V L +P A AL + RFPGR++L  LF + +++P+++    + A++   G+     
Sbjct: 80  TTICAVALGLPTAFALVRGRFPGREMLYGLFTLPMIVPLVIIAVAVYALFLKLGYTGT-- 137

Query: 118 HSVGFPLPFSIYGLNGILLAHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQKFK 177
                        +   +++HV+  LP+    ++ SL+             G SR Q   
Sbjct: 138 -------------MFAFVVSHVIVALPFTIISIINSLKLFDQSIEDAAVICGASRLQAVF 184

Query: 178 WVEWPRLRQQLPHVAGLVFMLCFTSFATVMA-LGGGPKATTIELAIYQAIKFDFD--LQI 234
            V +P +R  +  VAG +F    +    V++ +   P   T+ + ++  ++ D    + +
Sbjct: 185 KVTFPAIRPGM--VAGALFAFLVSWDEVVLSVMMASPTLQTLPVKMWTTLRQDLTPVIAV 242

Query: 235 GALLAIWQMLLCTLLTFTLQR 255
            + L I   +L  ++   L+R
Sbjct: 243 ASTLLIGLSVLVMVIAAALRR 263



 Score = 45.1 bits (105), Expect = 3e-09
 Identities = 48/232 (20%), Positives = 103/232 (44%), Gaps = 23/232 (9%)

Query: 293 VLVLPPLVMVVLAGLNSK--------------LGKVLTSGDFWSAVSHSLQVASLASSLA 338
           + +L P+V +VL    S                G+  ++ D+ +A + SL+VA L +  A
Sbjct: 25  LFLLLPIVFIVLLSFGSSQWLVFPPPGWTLKWYGQFFSNPDWMNAAAASLKVAVLTTICA 84

Query: 339 LASGIAMLLTSRALRLKAAHRRANGVEWIATLILVTPGLVVSTGLFLLLRNITDVFRLAY 398
           +A G+    T+ AL ++        +  + TL ++ P ++++  ++ L   +     +  
Sbjct: 85  VALGLP---TAFAL-VRGRFPGREMLYGLFTLPMIVPLVIIAVAVYALFLKLGYTGTMFA 140

Query: 399 WIVVAVNALMALPYVVKTLSQPMWHLAQQYELLCASLGMSGWRRFRLVEWRALRKPLSHA 458
           ++V  V  ++ALP+ + ++   +    Q  E      G S  +    V + A+R  +   
Sbjct: 141 FVVSHV--IVALPFTIISIINSLKLFDQSIEDAAVICGASRLQAVFKVTFPAIRPGMVAG 198

Query: 459 FAIGFLLSMGDLSAIALFGSQDFRTLPLYLYQLLGSYQMDTAAVVALAMLIM 510
               FL+S  ++    +  S   +TLP+ ++  L   + D   V+A+A  ++
Sbjct: 199 ALFAFLVSWDEVVLSVMMASPTLQTLPVKMWTTL---RQDLTPVIAVASTLL 247