Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 281 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score = 73.2 bits (178), Expect = 1e-17
 Identities = 66/271 (24%), Positives = 117/271 (43%), Gaps = 21/271 (7%)

Query: 1   MNRTPQLGFWVAAGVAT-----FVLAALAALLW------QSPPF-----NLNLIWQDAYY 44
           MNR    G W+AA         F++  +A L+W      QS        N + I+   +Y
Sbjct: 4   MNR----GKWLAALCLVPFALFFIVFEIAPLVWVMINSLQSEESGWGLANFSKIFGSKFY 59

Query: 45  RHVTQFSFYQAFWSTVLSVGLAIPVAHALSQRRFPGRDLLLKLFAMTLVLPVLVAIFGLI 104
           R   Q+S   +FWS+V  + +A+  A++L +     R+ +     MT     +   F  I
Sbjct: 60  RQAIQYSLEISFWSSVFGIIIAVLGAYSLRRVDSKLRNFVNAFANMTSNFAGVPLAFAFI 119

Query: 105 AIYGNSGFLAKTLHSVGFPLPFSIYGLNGILLAHVLFNLPYASRLLLQSLEAIPSEQHKL 164
            + G +G +   L   G    F++Y   G+++ +  F +P    LL  + +A+  +  + 
Sbjct: 120 ILLGFNGSITIMLKQSGIIQDFNLYSKTGLIILYTYFQIPLGVLLLYPAFDALREDWRES 179

Query: 165 CAHLGMSRWQKFKWVEWPRLRQQLPHVAGLVFMLCFTSFATVMAL-GGGPKATTIELAIY 223
            A LG + WQ ++ +  P L   L     ++      ++ATV AL  G      I +A  
Sbjct: 180 AALLGANGWQFWRHIGLPVLTPALLGTFVILLANALGAYATVYALTTGNFNVLPIRIAAM 239

Query: 224 QAIKFDFDLQIGALLAIWQMLLCTLLTFTLQ 254
            +     D  + + LA+  + L T++T   Q
Sbjct: 240 VSGDISLDPNLASALAVVLVALMTIVTVVHQ 270