Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., hypothetical protein from Escherichia fergusonii Becca

 Score =  466 bits (1198), Expect = e-135
 Identities = 254/527 (48%), Positives = 344/527 (65%), Gaps = 11/527 (2%)

Query: 3   RTPQLGFWVAAGV--ATFV----LAALAALLWQSPPFNLNLIWQDAYYRHVTQFSFYQAF 56
           R P +  W+  GV  AT V    LAA  AL W +P  +   +WQD+Y  HV +FSF+QAF
Sbjct: 5   RQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGDWVAVWQDSYLWHVVRFSFWQAF 64

Query: 57  WSTVLSVGLAIPVAHALSQRRFPGRDLLLKLFAMTLVLPVLVAIFGLIAIYGNSGFLAKT 116
            S  LSV  AI +A AL +RRFPGR +LL+L AMTL+LPVLVA+FG++++YG  G+LA  
Sbjct: 65  LSAQLSVVPAIFLARALYRRRFPGRQMLLRLCAMTLILPVLVAVFGILSVYGRQGWLASL 124

Query: 117 LHSVGFPLPFSIYGLNGILLAHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQKF 176
             S+G    FS YGL GILLAHV FNLP ASRLLLQ+LE IP EQ +L A LGM  W  F
Sbjct: 125 WQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFF 184

Query: 177 KWVEWPRLRQQLPHVAGLVFMLCFTSFATVMALGGGPKATTIELAIYQAIKFDFDLQIGA 236
           ++VEWP LR+Q+P VA L+FMLCF SFATV++LGGGP+ATTIELAIYQA+ +D+D    A
Sbjct: 185 RFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAA 244

Query: 237 LLAIWQMLLCTLLTFTLQRFSHSRPMNSAASKVTERW--VRDSWRAKVWDASWIVAACVL 294
           +LA+ QM+ C  L    QR S +    +  + + + W    D   +++ D + IV A +L
Sbjct: 245 MLALIQMVCCLGLVLLSQRLSKA---IAPGTTLLQGWRDPDDRLHSRICDTALIVLALLL 301

Query: 295 VLPPLVMVVLAGLNSKLGKVLTSGDFWSAVSHSLQVASLASSLALASGIAMLLTSRALRL 354
           +LPPL+ V++ G+N +L +VL     W A+  SL++A  A  L +   + +L +SR LR 
Sbjct: 302 LLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRA 361

Query: 355 KAAHRRANGVEWIATLILVTPGLVVSTGLFLLLRNITDVFRLAYWIVVAVNALMALPYVV 414
           +        +E    LIL  PG+V++TG FLLL N   + + A  IV+  NALMA+PY +
Sbjct: 362 RQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYAL 421

Query: 415 KTLSQPMWHLAQQYELLCASLGMSGWRRFRLVEWRALRKPLSHAFAIGFLLSMGDLSAIA 474
           K L  PM  +  +Y +LC SLG+ GW R ++VE RAL++PL+ A A   +LS+GD   +A
Sbjct: 422 KVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVA 481

Query: 475 LFGSQDFRTLPLYLYQLLGSYQMDTAAVVALAMLIMSVGWFYVIERL 521
           LFG+ DFRTLP YLYQ +GSY+    AV AL +L++    F VIE++
Sbjct: 482 LFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKI 528