Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 561 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  107 bits (268), Expect = 9e-28
 Identities = 133/547 (24%), Positives = 229/547 (41%), Gaps = 46/547 (8%)

Query: 8   GFWVAAGVATFVLAALAALLWQSPPFNLNLI---------WQDAYYRHVTQFSFYQ-AFW 57
           GFW +  V   +L A+  +L   P F++  I         +  + Y  V    FY  A W
Sbjct: 19  GFWTSVTVFAVILLAIFLIL---PIFSVFFISFFDAKTGAFGFSNYAEVFTRRFYTVALW 75

Query: 58  STVLSVG---------LAIPVAHALSQRRFPGRDLLLKLFAMTLVLPVLVAIFGLIAIYG 108
           +T++ +G         L IP+A   S+ R  GR  +     + L  P  +  +  I ++G
Sbjct: 76  NTLV-IGVLGMLGACLLGIPLAFCTSRYRIKGRTFIATFAVLVLCAPPFIGAYAWIMLFG 134

Query: 109 NSGFLAKTLHSVGFPLPFSIYGLNGILLAHVLFNLPYASRLLLQSLEAIPSEQHKLCAHL 168
            +G +   L   G  LP +IYG+ GI++   L   PY   +   +L  I         +L
Sbjct: 135 ANGAVTNLLSFAGISLP-TIYGIPGIVMVFSLKFFPYIYLMTENALNTINKSYEDAAENL 193

Query: 169 GMSRWQKFKWVEWPRLRQQLPHVAGLVFMLCFTSFATVMALGGGPKA-TTIELAIYQAIK 227
           G + +Q+F+ +  P +   +   A + F+L    F T   LG G +  +TI  A Y +  
Sbjct: 194 GCTAFQRFRKITLPLVFPAVSTGAIICFVLSIADFGTPAILGKGIRTLSTIAYAQYTSEM 253

Query: 228 FDFDLQIGALLAIWQMLLCTLLTFTLQRFSHSRPMNSAASKVTERWVRDSWRAKVWDASW 287
                   A+     M+  ++    LQR  H       AS +T R V+ S R      S+
Sbjct: 254 AGTPTM--AVTISMVMIAISMAALLLQR--HILAKRRYASSLTNRPVKQSMRPL---KSF 306

Query: 288 IV-AACVLV----LPPLVMVVLAGLNSKLGKVLTSG---DFWSAV-SHSLQVASLASSLA 338
           IV   C LV    + P + V+     +  G V T G   D +S +   S Q  + +   A
Sbjct: 307 IVHGFCYLVVFIAMLPSLTVIYTSFLATSGPVFTGGFGLDSYSRILRDSPQAIANSFMFA 366

Query: 339 LASGIAMLLTSRALRLKAAHRRANGVEWIATLILVT----PGLVVSTGLFLLLRNITDVF 394
           LA+ + + + S  L      RR N V     L+L+     PG+V++ G     R      
Sbjct: 367 LAAVVLIAIVSGLLSFIVV-RRDNAVSGSLDLLLMVPYLIPGVVMAIGYVTTFRYPPFDI 425

Query: 395 RLAYWIVVAVNALMALPYVVKTLSQPMWHLAQQYELLCASLGMSGWRRFRLVEWRALRKP 454
                I+V +  +  LPY V++ +  +  +    E    +LG S  + F  V    +   
Sbjct: 426 TGTALIIVLLVFIRRLPYGVRSTTSILRQIKPSIEEAAVNLGASPAKTFLSVTVPLMLPG 485

Query: 455 LSHAFAIGFLLSMGDLSAIALFGSQDFRTLPLYLYQLLGSYQMDTAAVVALAMLIMSVGW 514
           L     + F+ ++ +LS+  +  +    T+P+ +Y  +   +  TAA ++  +L+ +   
Sbjct: 486 LIIGSLMSFITAINELSSTLILYTARTITMPVLIYIQVIDGEFGTAAALSTLLLVSTGVC 545

Query: 515 FYVIERL 521
            +V+ RL
Sbjct: 546 VFVVFRL 552