Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., ABC transporter, membrane spanning protein (thiamine) from Agrobacterium fabrum C58

 Score =  320 bits (819), Expect = 1e-91
 Identities = 196/513 (38%), Positives = 297/513 (57%), Gaps = 11/513 (2%)

Query: 12  AAGVATFVLAALAALLWQSPPFNLNLIW-QDAYYRHVTQFSFYQAFWSTVLSVGLAIPVA 70
           AA  A F+  ALA     S     +     DAY   + +F+ YQA  ST+LS+ L +PVA
Sbjct: 16  AAFAAVFLFMALAVFALLSFDVGASAAGVMDAYTLRILRFTLYQATLSTLLSIALGLPVA 75

Query: 71  HALSQRR-FPGRDLLLKLFAMTLVLPVLVAIFGLIAIYGNSGFLAKTLHSVGFPLPFSIY 129
            AL++R+ FPGR  +++L A+ + LPV+V  FG+I I+G  G L   L   G   PFSIY
Sbjct: 76  LALARRKEFPGRIWIIRLMAVPMGLPVIVGAFGIITIWGRQGVLNSALVFAGADEPFSIY 135

Query: 130 GLNGILLAHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQKFKWVEWPRLRQQLP 189
           GL+GIL+AHV FNLP + RL+L  LE IP E  ++ A LGM     F+++EWP + + +P
Sbjct: 136 GLSGILIAHVFFNLPLSVRLMLAGLERIPGEYWRMAASLGMGPVSVFRFIEWPAVSRLIP 195

Query: 190 HVAGLVFMLCFTSFATVMALGGGPKATTIELAIYQAIKFDFDLQIGALLAIWQMLLCTLL 249
            +AGLVFMLC TSF  V+ LGGGP ATT+E+AIYQA++FDFD Q    L++ Q++L  +L
Sbjct: 196 GIAGLVFMLCATSFTLVLLLGGGPAATTLEVAIYQALRFDFDPQRAIALSVLQIVLTAVL 255

Query: 250 TFTLQRFSHSRPMNSAASKVTERWVRDSWRAKVWDASWIVAACVLVLPPLVMVVLAGLNS 309
              L          S+  +   R+   +  A++WD + IV A  LV  PLV + ++GL +
Sbjct: 256 LGLLAFLPSPEAEISSLGRNIRRFDGRTTGARLWDGAAIVFAVFLVGLPLVAIAVSGLQA 315

Query: 310 KLGKVLTSGDFWSAVSHSLQVASLASSLALASGIAMLLTSRALRLKAAHRRANGVEWI-- 367
            L ++L +  F  A + SL +A L++ L +   +A++   +A+  +       G+     
Sbjct: 316 DLSRLLIAPIFLRAATTSLLIAMLSAILVVLCCMAIIGARQAIGSRRQLAWPFGLLSALL 375

Query: 368 ---ATLILVTPGLVVSTGLFLLLRNITDVFRLAYWIVVAVNALMALPYVVKTLSQPMWHL 424
              ++L+L+ P +V+ +G FLLLR   DV   A  +V  +N LMALP  ++ +       
Sbjct: 376 GAGSSLVLLVPPVVLGSGWFLLLRVFGDVSFYAPVLVALINMLMALPLAMRVMEPAFTSH 435

Query: 425 AQQYELLCASLGMSGWRRFRLVEWRALRKPLSHAFAIGFLLSMGDLSAIALFGSQDFRTL 484
             +   L ASLG+ G+ R R  +   L +P+  A +    LS+GDL A+ALFGS++F TL
Sbjct: 436 FLRTGRLSASLGLQGYSRLRFADLPVLWRPMLMALSFAMALSLGDLGAVALFGSKNFVTL 495

Query: 485 PLYLYQLLGSYQMDTAA----VVALAMLIMSVG 513
           P  +Y  +GSY+ + AA    ++ +  L+++ G
Sbjct: 496 PWLVYSNMGSYRTNDAAGYAFLLGVVCLLLAAG 528