Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., RNA polymerase sigma-54 factor 2 from Xanthobacter sp. DMC5

 Score =  271 bits (692), Expect = 5e-77
 Identities = 184/516 (35%), Positives = 268/516 (51%), Gaps = 38/516 (7%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           M P L+ +  Q L MTPQL QAI+LLQLS ++L   ++  LE NPLLE     D + S  
Sbjct: 3   MSPKLEFRQSQSLVMTPQLMQAIKLLQLSNMELVAYVEAELERNPLLERITEGDTSGSDP 62

Query: 61  SVRMTEESPREPEEL-YEPEPQDSSDLI----EKSEISAELEMDTTWDEVYS----ANTG 111
              + E    E      + EP  +SD      E+S  + E  +DT    V+     A+ G
Sbjct: 63  QPEVRETRGEEMARGGLDGEPPPASDWTGNDNEQSRAAMETRLDTDLGNVFPDDVPADRG 122

Query: 112 STGLALDDDAPIY--------QGE---------TTQTLQDYLHWQLDLTPFSDVDRTIAV 154
            TG      +P          +GE            TL D+L  QL +       R I +
Sbjct: 123 VTGGGSTASSPSMGEWSGGGERGEDYNPEAFLTAETTLADHLEAQLSVAVSDPARRLIGI 182

Query: 155 ALIDAIDDYGYLTVSLEEIQESLRSDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQ 214
            +I  ID+ GY T  L+ +        +   E+EAV K IQ F+P GV + NL +CL +Q
Sbjct: 183 NVIGLIDETGYFTGDLDLLAGQF---GVPRAEVEAVLKLIQTFEPSGVGARNLAECLAIQ 239

Query: 215 LTTYPCDTPWLEEARLLLSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGS 274
           L     +    + A   L   ++ L   D   + +   +  EDL +++  I++LDP+PG 
Sbjct: 240 LR----ERDRFDPAMQALVANLELLARHDRNALKRVCGVDNEDLADMIGEIRRLDPKPGL 295

Query: 275 RIAQDHAEYVIPDVSVYK-EQGRWLVTINPDSVPKLKINQQY-ADLMRG--NNAESNYIR 330
                    ++PDV V     G WLV +N +++P++ +NQ Y A +++   +  E +++ 
Sbjct: 296 AFGSGVVHPLVPDVYVRPGADGTWLVELNSETLPRVLVNQSYHATVVKHAKSQEEKSFLA 355

Query: 331 TNLQEAKWLIKSLESRNETLLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHEST 390
             LQ A WL +SL+ R  T+LKVA  IV  Q  F  +G   ++P+ L  VA A+ MHEST
Sbjct: 356 DCLQSASWLTRSLDQRARTILKVASEIVRQQDAFLLHGVRFLRPLNLRTVADAIGMHEST 415

Query: 391 ISRVTTQKYMHTPRGIFELKYFFSSHVSTDNGGEC-SSTAIRALIKKLVAAENPAKPLSD 449
           +SRVT+ KY+ TPRG+ E+K+FFSS +S   GGE  S+ ++R  IK L+ AE P   LSD
Sbjct: 416 VSRVTSNKYISTPRGVVEMKFFFSSAISASGGGEAHSAESVRHRIKMLIEAEAPKDVLSD 475

Query: 450 SKIATLLADQGIQVARRTIAKYRESLGIAPSSQRKR 485
             +   L D GI +ARRT+AKYRE + I  S QR+R
Sbjct: 476 DTLVQKLKDDGIDIARRTVAKYREGMNIPSSVQRRR 511