Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

 Score =  316 bits (810), Expect = 1e-90
 Identities = 205/542 (37%), Positives = 303/542 (55%), Gaps = 65/542 (11%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLE--VEENQDEAPS 58
           MK  L L++ Q LA+TPQLQQ+IRLLQLSTL+L QE+++ L+ NP LE   EE   E   
Sbjct: 1   MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFG 60

Query: 59  LDSVRMTEESPREPEELYE--------PEPQDSSDLIEKSEISAE--------LEMDTTW 102
           LD+V    ++P + +E+ E        P    S+   E S  +A+         E +  W
Sbjct: 61  LDAV----DTPVQRDEVAEAGEGDFTPPSASTSTASTETSTTAADSDGPAAEIAEREPDW 116

Query: 103 DEVYSANTGSTGLALDD-----DAPIYQGE--------------TTQTLQDYLHWQLDLT 143
           +       G+  +A DD     DAP  Q                + ++LQ +LH Q    
Sbjct: 117 E-----GDGTVDMAPDDSEWGSDAPARQNNLGDDERADATELARSQESLQSFLHRQALSL 171

Query: 144 PFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLRSDDIE-----LDEIEAVRKRIQQFD 198
             S+ D      LI++++D GYL  SL  +   L  DD +     +   +     +Q  +
Sbjct: 172 RLSENDSAALRFLIESLNDDGYLEDSLPALASGLAGDDNDQFDDLVHHFQVALGLLQSLE 231

Query: 199 PFGVASLNLQDCLLLQLTTYPCDTPWLEE---------ARLLLSQYIDDLGNRDYKTILK 249
           P GV + +L +CL +QL     +    EE         A  +  Q ++ L  RD+K +  
Sbjct: 232 PVGVGARDLGECLSIQLRALAAEDEDGEEEDRAQVYKTAIAICKQPMELLARRDFKRLAT 291

Query: 250 ETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKE----QGRWLVTINPDS 305
            T+  EE +R  LQ+I +L+P+PG R        VIPDV V K       ++ V +NP+ 
Sbjct: 292 LTRSNEELVRLALQVIARLEPKPGRRFVDVERNIVIPDVIVTKTGRGTNVKFRVMLNPEV 351

Query: 306 VPKLKINQQYADLMRGNNAE-SNYIRTNLQEAKWLIKSLESRNETLLKVAKCIVEHQHDF 364
           +P+L+++  YA  ++ +  E S  +   LQEA+W IK+++ R +T+L+V+  IVE Q  +
Sbjct: 352 MPRLRVHDIYAGALKSHKGEGSQALSQRLQEARWFIKNIQQRFDTILRVSNAIVERQKSY 411

Query: 365 FEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSHVSTDNGGE 424
           F +GE AM+P+VL ++A  + +HESTISRVTT KYM TP G  ELKYFF S + T+ GG 
Sbjct: 412 FVHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETGGN 471

Query: 425 CSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLGIAPSSQRK 484
            SSTA+RALIK+ V++E+  KPLSDS+I+ +L +QGI+ ARRT+AKYRE+L IAP++ RK
Sbjct: 472 ASSTAVRALIKQFVSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRK 531

Query: 485 RL 486
            L
Sbjct: 532 AL 533