Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

 Score =  264 bits (674), Expect = 6e-75
 Identities = 183/508 (36%), Positives = 269/508 (52%), Gaps = 41/508 (8%)

Query: 3   PSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLDSV 62
           P L ++  Q L MTPQLQQAI+LL LS L+++  +   LE NPLLE     D       V
Sbjct: 5   PRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGREGSGV 64

Query: 63  RMTEESPREPEELYEPEPQDSSDLIEKS----------EISAELEMDTTWDEVYSANTGS 112
               E+P         E   S DLI +           +  AE  +D    +   A +GS
Sbjct: 65  DREVEAPT-----LAAETGASDDLIAQGLGGADSPLDVDHGAETFIDDGPADRMGAGSGS 119

Query: 113 -----------TGLALDDDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAID 161
                      +G A+D D+         +LQ++L  Q   T  S +D  IA  LI  I 
Sbjct: 120 GSLDMLGGGSGSGEAVDFDS---FANAAPSLQEHLMDQARST-LSGMDLLIATQLIGQIS 175

Query: 162 DYGYLTVSLEEIQESLRSDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCD 221
           + GYL  +L +    L    + L  +EAV + I  FDP GV + +L +CL LQ       
Sbjct: 176 EAGYLEANLLQTAHGL---GVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRY 232

Query: 222 TPWLEEARLLLSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHA 281
            P ++  RLL +  +D L       + +   + EEDL ++++ ++  DP+PG R A D A
Sbjct: 233 DPCIQ--RLLAN--LDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSA 288

Query: 282 EYVIPDVSVYKEQGRWLVTINPDSVPKLKINQQYADLMRG---NNAESNYIRTNLQEAKW 338
             V PD+ V + +  W + +N  ++P++ +N+ Y   + G   + A   ++   L  A W
Sbjct: 289 TPVTPDLFVSRTREGWGIEVNSATLPRVLVNRTYYVELAGGPQDKASKAWLADCLASANW 348

Query: 339 LIKSLESRNETLLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQK 398
           L+K+L+ R +T++KVA  IV  Q DFF  G   +KP+ L  VA A+EMHEST+SRVT+ K
Sbjct: 349 LVKALDQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNK 408

Query: 399 YMHTPRGIFELKYFFSSHV-STDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLA 457
           Y+  PRG++ELKYFF+S V + D  G  S+ A+++ IK L+ AE     LSD  +  LL 
Sbjct: 409 YLSCPRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLR 468

Query: 458 DQGIQVARRTIAKYRESLGIAPSSQRKR 485
            +G+ +ARRT+AKYRES+GI  S QR+R
Sbjct: 469 AKGMDIARRTVAKYRESMGIGSSVQRRR 496