Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 490 a.a., RNA polymerase factor sigma-54 from Paraburkholderia sabiae LMG 24235

 Score =  345 bits (885), Expect = 2e-99
 Identities = 190/493 (38%), Positives = 298/493 (60%), Gaps = 10/493 (2%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           M P+++L+  Q  A+TP+LQQ++RLLQLS+L+ QQE++ AL++NP LE + +   AP   
Sbjct: 1   MPPTIELRAKQTFALTPRLQQSVRLLQLSSLEFQQELRNALDTNPFLEYDPS---APEEM 57

Query: 61  SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGSTGLAL--- 117
           S   T +      E      +D++    ++E + E    +     YS +    G +    
Sbjct: 58  SANKTADGTGPDGETLPAAERDTALESAQAEPATESAASSDDGGDYSGDAYGRGPSRYNG 117

Query: 118 DDDA--PIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQE 175
           D DA  P        TL + LH  L L    D DR +A  +I+A+DD GYL   L ++ +
Sbjct: 118 DSDAADPTEWARVQPTLHEQLHDALRLYRLDDRDREVARLVIEALDDDGYLRQDLADLTD 177

Query: 176 SLRSDD-IELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQ 234
            +  +  +  DE+    + +Q  D  G+A+ +L +CL LQ+   P DTP    A+ ++  
Sbjct: 178 IVDIEPALTEDELLVALRLVQTLDRPGLAARSLSECLSLQIDALPGDTPGRSVAKQVVEH 237

Query: 235 YIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQ 294
           ++D L  R++  + K+     E+LR    L+++LDP+PG+   +    Y++PDV V   +
Sbjct: 238 HLDRLARREHAELQKQIGCDAEELRVACALVRKLDPKPGNSYGRADDNYIVPDVIVRSVR 297

Query: 295 GRWLVTINPDSVPKLKINQQYADLM-RGNNAESNYIRTNLQEAKWLIKSLESRNETLLKV 353
            +W+VT+NP  +P+ +I++ YA+L  +   A  + +   LQEA+WLI++ + R ET+ +V
Sbjct: 298 NKWVVTVNPAVLPRARIHRMYAELFAQSAGASRSPLAQQLQEARWLIRNAQQRFETIQRV 357

Query: 354 AKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFF 413
           A+CIV HQ  FF+YGE A+KP+VL DVA  + +HESTISR T  KYM TPRGIFE K+FF
Sbjct: 358 AECIVAHQKPFFQYGEIALKPLVLRDVAEELGLHESTISRATGNKYMATPRGIFEFKHFF 417

Query: 414 SSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRE 473
              + T++GG CS+ A+RAL+K+++AAEN   PLSD  +A +LADQG+ VARRT+AKYR 
Sbjct: 418 PRELGTESGGTCSAAAVRALLKEMIAAENTRDPLSDVALAKMLADQGVLVARRTVAKYRH 477

Query: 474 SLGIAPSSQRKRL 486
            + + P+  R+++
Sbjct: 478 LMKVPPAELRRQV 490