Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., RNA polymerase sigma-54 factor from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  256 bits (654), Expect = 1e-72
 Identities = 171/500 (34%), Positives = 262/500 (52%), Gaps = 41/500 (8%)

Query: 6   QLKLGQQLA--MTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEV--EENQDEAPSLDS 61
           +L L Q L+  ++PQ  Q I+LLQ+ T +L+  I+E LE NP LE   EE  +E    D 
Sbjct: 3   RLDLRQLLSQKLSPQQIQFIKLLQIPTAELEMRIKEELEINPALEEGREEPAEEYSESDE 62

Query: 62  VRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGSTGLALDDDA 121
               E+  ++       E  D +D +   EIS            Y       G   D + 
Sbjct: 63  YDSDEDYSKD-------EDLDLNDYLNDDEISG-----------YKMQGDRGGDDEDKEM 104

Query: 122 PIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLR-SD 180
           PI     T TL D L  QL      D    I + LI +ID  GY+   L  I   L  S 
Sbjct: 105 PIAM---TSTLTDALMDQLGFLNLDDKQYNIGMQLIGSIDHDGYIRRDLSSIANDLAFSQ 161

Query: 181 DIEL--DEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQYIDD 238
           +IE   +EIE V   IQ FDP G+A+ +L +CLLLQL     D   +   R++   + D+
Sbjct: 162 NIETSEEEIEQVLHLIQSFDPAGIAARDLPECLLLQLERREQDQTTVLAERIIRESF-DE 220

Query: 239 LGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQ-DHAEYVIPDVSVYKEQGRW 297
              + Y  I  +  + EE+L++ + LI +L+P+PG   A     +Y+IPD  +    G+ 
Sbjct: 221 FTKKHYSRIQSKFGISEEELKKAVDLIVRLNPKPGGAGASMTRVQYIIPDFILTNNNGQL 280

Query: 298 LVTINPDSVPKLKINQQYADLMRGNNAESN----------YIRTNLQEAKWLIKSLESRN 347
            +++N  + P L+I++ Y+D+    +              +++  L  AKW I ++  R 
Sbjct: 281 ELSLNSRNAPDLRISRSYSDMFDAYDKSDKKDKKLKETVTFVKQKLDAAKWFIDAIRQRQ 340

Query: 348 ETLLKVAKCIVEHQHDFFEYGEEA-MKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGI 406
            TLL+  + I+++QHDFF  G+E+ ++PM+L D+A  + M  ST+SRV   K + T  GI
Sbjct: 341 NTLLRTMEAIIKYQHDFFLEGDESELRPMILKDIAEEIGMDISTVSRVANSKAVQTEFGI 400

Query: 407 FELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARR 466
           + LKYFFS  ++TD+G + SS  ++ ++K+++  E+  KPLSD KI  LL ++G  +ARR
Sbjct: 401 YPLKYFFSEGIATDSGEDASSREVKHILKEIIDNESKRKPLSDEKIEKLLNEKGYNIARR 460

Query: 467 TIAKYRESLGIAPSSQRKRL 486
           T+AKYRE L I  +  RK L
Sbjct: 461 TVAKYREQLNIPVARLRKEL 480