Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., RNA polymerase sigma-54 factor from Magnetospirillum magneticum AMB-1

 Score =  290 bits (741), Expect = 1e-82
 Identities = 192/505 (38%), Positives = 282/505 (55%), Gaps = 34/505 (6%)

Query: 3   PSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQ----DEAPS 58
           P L ++  Q L MTPQLQQAI+LLQLS  +L   I + LE NPLLE EE +       P 
Sbjct: 5   PRLDIRQTQSLVMTPQLQQAIKLLQLSNFELTAFIDQELERNPLLEREEGERGPEPTEPK 64

Query: 59  LDSVRMT--EESPREP---EELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYS--ANTG 111
           +DS  +   + +P E    + +     +D  D+   +  + +   D   DE      N G
Sbjct: 65  VDSTDLAVLDSAPAEAPLLDGMNGGSAEDGMDVDYDNTFNNDSASDAVQDESLGQWGNVG 124

Query: 112 STGLALDDDAP----IYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLT 167
             G   DD       +  GE +  L+D+L  Q+ +      DR IA+ LI+ +D+ GYL 
Sbjct: 125 GGGGGFDDGESNLEQMVAGEIS--LRDHLAAQVSMDIPDAGDRLIALHLIEMLDEAGYLI 182

Query: 168 VSLEEIQESLRSDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEE 227
             L+E+ E L       + +  V KR+Q FDP GV + +L++CL LQL     +   L+ 
Sbjct: 183 GDLDELAERL---GCPTERVLVVLKRVQGFDPVGVFARSLKECLGLQLA----EKNRLDP 235

Query: 228 ARLLLSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDH--AEYVI 285
           A   L   ++ L  RD   ++K   +  ED+ E++  I+ LDP+P   +A DH  A+ V 
Sbjct: 236 AMQALLDNLELLARRDLPGLMKACGVDAEDMAEMIGEIKALDPKPA--LAFDHIVAQPVT 293

Query: 286 PDVSVYKEQ-GRWLVTINPDSVPKLKINQQYADLMRG---NNAESNYIRTNLQEAKWLIK 341
           PDV + + Q G W+V +N D++P++ +N +Y   + G   +  +  YI    Q A WL+K
Sbjct: 294 PDVLMRRTQDGAWVVELNSDTLPRVLVNTRYYSKIAGAARSKDDKTYISERFQSANWLVK 353

Query: 342 SLESRNETLLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMH 401
           SL  R  T+LKVA  IV  Q  FF  G + ++P+VL D+A A+ MHEST+SRVT+ KYM 
Sbjct: 354 SLHQRATTILKVATEIVRQQDAFFRLGVQHLRPLVLRDIATAISMHESTVSRVTSNKYMA 413

Query: 402 TPRGIFELKYFFSSHVSTDNGGEC-SSTAIRALIKKLVAAENPAKPLSDSKIATLLADQG 460
           TPRGI+ELKYFF+  + + +GG+  S+ ++R  IK L+ AE  +  LSD  I   L  +G
Sbjct: 414 TPRGIYELKYFFTQAIGSADGGDAHSAESVRHRIKALIDAEGKS-VLSDDSIVDALKAEG 472

Query: 461 IQVARRTIAKYRESLGIAPSSQRKR 485
           I +ARRT+AKYRE++ I  S QR+R
Sbjct: 473 IDIARRTVAKYREAMNIGSSVQRRR 497