Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., RNA polymerase sigma-54 factor RpoN from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  613 bits (1581), Expect = e-180
 Identities = 306/491 (62%), Positives = 393/491 (80%), Gaps = 18/491 (3%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           MK  LQL+L QQLAMTPQLQQAIRLLQLSTL+LQQE+Q+ALE+NPLLE  +  DE  +  
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLEQTDLHDEIDT-- 58

Query: 61  SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANT--GSTGLALD 118
                    ++P++    +P D++D +E+ E+  EL +D +WDE+Y+A T  G +G  +D
Sbjct: 59  ---------QQPQD---NDPLDTADALEQKEMPEELPLDASWDEIYTAGTPSGPSGDYID 106

Query: 119 DDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLR 178
           D+ P+YQGETTQ+LQDYL WQ++LTPFSD DR IA +++DA+DD GYLTVSL+EI+ES+ 
Sbjct: 107 DELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDEIRESMG 166

Query: 179 SDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQYIDD 238
             +++LDE+EAV KRIQ+FDP GVA+ +L+DCLL+QL+ +   TPWLEEARL++  ++D 
Sbjct: 167 DVEVDLDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARLIICDHLDL 226

Query: 239 LGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQGRWL 298
           L N D++T+++ T+LKEE L+E + LIQ LDPRPG  I     EYVIPDV V K  GRW 
Sbjct: 227 LANHDFRTLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWT 286

Query: 299 VTINPDSVPKLKINQQYADLMRG--NNAESNYIRTNLQEAKWLIKSLESRNETLLKVAKC 356
           V +N DS+P+L+INQ YA +     N+A+S +IR+NLQ+AKWLIKSLESRN+TLL+V++C
Sbjct: 287 VELNSDSIPRLQINQHYAAMCNSARNDADSQFIRSNLQDAKWLIKSLESRNDTLLRVSRC 346

Query: 357 IVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSH 416
           IVE Q  FFE GEE MKPMVL D+A AVEMHESTISRVTTQKY+H+PRGIFELKYFFSSH
Sbjct: 347 IVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSH 406

Query: 417 VSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLG 476
           V+T+ GGE SSTAIRAL+KKL+AAENPAKPLSDSK+ +LL++QGI VARRT+AKYRESL 
Sbjct: 407 VNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLS 466

Query: 477 IAPSSQRKRLL 487
           I PS+QRK+L+
Sbjct: 467 IPPSNQRKQLV 477