Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., RNA polymerase factor sigma-54 from Erwinia tracheiphila SCR3

 Score =  585 bits (1507), Expect = e-171
 Identities = 298/491 (60%), Positives = 382/491 (77%), Gaps = 18/491 (3%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           MK  LQL+L QQLAMTPQLQQAIRLLQLSTL+L QEIQ+ALESNPLLE  E  +E  S  
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELAQEIQQALESNPLLEQTEIHEEVDS-- 58

Query: 61  SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGS-TGLAL-D 118
                        E  E E  D+ + +E+ ++  EL +D TWDE+Y+A T S TG    D
Sbjct: 59  ------------REYQEKEALDTREALEQKDMPEELPLDATWDEIYTAGTPSGTGTDYHD 106

Query: 119 DDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLR 178
           D+ P+YQGETTQ+LQDYL WQ+DLTPF+D DR IA +++DA+DD GYLTV LE+I ESL 
Sbjct: 107 DELPVYQGETTQSLQDYLTWQMDLTPFTDTDRAIATSIVDAVDDTGYLTVPLEDILESLG 166

Query: 179 SDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQYIDD 238
           ++++ ++E+EAV KR+Q+FDP GV + +L+DCL++QL+ +  + P+L+EA L++S+++D 
Sbjct: 167 NEELTIEEVEAVLKRVQRFDPIGVCARDLRDCLMVQLSQFSPELPFLKEACLIVSEHLDL 226

Query: 239 LGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQGRWL 298
           L N D++T+++ T+LKE+ L+  +QLIQ LDPRPG  I     EYVIPDV V K   RW 
Sbjct: 227 LANHDFRTLMRVTRLKEDVLKNAMQLIQSLDPRPGQSINTSEPEYVIPDVLVRKIATRWA 286

Query: 299 VTINPDSVPKLKINQQYADL--MRGNNAESNYIRTNLQEAKWLIKSLESRNETLLKVAKC 356
           V +N DSVP++KINQ YA L     N+ +S +IR+NLQEAKWLIKSLESRN+TLLKV +C
Sbjct: 287 VELNNDSVPRIKINQHYASLGGPGRNDNDSQFIRSNLQEAKWLIKSLESRNDTLLKVTRC 346

Query: 357 IVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSH 416
           IV+ Q  FFE GEE M+PMVL D+A AV+MHESTISRVTTQKY+H+PRGIFELKYFFSSH
Sbjct: 347 IVDQQQAFFEQGEEFMRPMVLADIAEAVDMHESTISRVTTQKYLHSPRGIFELKYFFSSH 406

Query: 417 VSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLG 476
           V+T+ GGE SSTAIRAL++KL++AENPAKPLSDSK+ TLL++QGI VARRT+AKYRESL 
Sbjct: 407 VNTEGGGEASSTAIRALVRKLISAENPAKPLSDSKLTTLLSEQGIMVARRTVAKYRESLS 466

Query: 477 IAPSSQRKRLL 487
           I PS+QRK+L+
Sbjct: 467 IPPSNQRKQLV 477