Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Enterobacter asburiae PDN3

 Score =  608 bits (1567), Expect = e-178
 Identities = 302/491 (61%), Positives = 390/491 (79%), Gaps = 18/491 (3%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           MK  LQL+L QQLAMTPQLQQAIRLLQLSTL+LQQE+Q+AL+SNPLLE  +  DE     
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEV---- 56

Query: 61  SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGSTGLA--LD 118
                     + ++  + E  D++D +E+ E+  EL +D +WDE+Y+A T S   A   D
Sbjct: 57  ----------DTQQSQDTEALDTADALEQKEMPDELPLDASWDEIYTAGTPSGTRADYQD 106

Query: 119 DDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLR 178
           D+ P+YQGETTQ+LQDYL WQ++LTPFSD DR IA +++DA+DD GYLTV+L++I ES+ 
Sbjct: 107 DELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDDILESMG 166

Query: 179 SDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQYIDD 238
            D+IEL+E+EAV KRIQ+FDP GVA+ +L+DCLL+QL+ +  +TPW++EARL++S ++D 
Sbjct: 167 DDEIELEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWIDEARLIISDHLDL 226

Query: 239 LGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQGRWL 298
           L N D++++++ T+LKEE L+E + LIQ LDPRPG  I     EYVIPDV V K    W+
Sbjct: 227 LANHDFRSLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDHWV 286

Query: 299 VTINPDSVPKLKINQQYADLMRG--NNAESNYIRTNLQEAKWLIKSLESRNETLLKVAKC 356
           V +N DS+P+L+INQQYA +     N++++ YIR+NLQEA+WLIKSLESRN+TLL+V++C
Sbjct: 287 VELNSDSIPRLQINQQYASMCTSARNDSDNQYIRSNLQEARWLIKSLESRNDTLLRVSRC 346

Query: 357 IVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSH 416
           IVE Q  FFE GEE MKPMVL D+A AVEMHESTISRVTTQKY+H+PRGIFELKYFFSSH
Sbjct: 347 IVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSH 406

Query: 417 VSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLG 476
           V+T+ GGE SSTAIRAL+KKL+AAENPAKPLSDSK+ T+L+DQGI VARRT+AKYRESL 
Sbjct: 407 VNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLS 466

Query: 477 IAPSSQRKRLL 487
           I PS+QRK+L+
Sbjct: 467 IPPSNQRKQLV 477