Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., RNA polymerase factor sigma-54 from Dickeya dianthicola ME23

 Score =  590 bits (1520), Expect = e-173
 Identities = 299/491 (60%), Positives = 387/491 (78%), Gaps = 18/491 (3%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           MK  LQL+L QQLAMTPQLQQAIRLLQLSTL+LQQEIQ+ALESNPLLE  +  DE     
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQQALESNPLLEQADIHDEV---- 56

Query: 61  SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANT--GSTGLALD 118
                     E +E  + E  D+ + +E+ ++  EL +D  WDE+Y+A T  G++    D
Sbjct: 57  ----------ETQESSDSETLDTREALEQKDMPDELPLDAAWDEIYTAGTPSGTSTDYRD 106

Query: 119 DDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLR 178
           ++ P+YQGETTQTLQDYL WQ++LTPFSD D  IA +++DA+D+ GYLTVSL++I+ES+ 
Sbjct: 107 EELPVYQGETTQTLQDYLMWQVELTPFSDTDSAIATSIVDAVDNTGYLTVSLDDIRESIG 166

Query: 179 SDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQYIDD 238
           +D++ L+E+EAV KR+Q+FDP GVA+ +L++CLL+QL+ +    P L EARL++S+Y++ 
Sbjct: 167 NDEVTLEEVEAVLKRVQRFDPVGVAARDLRECLLVQLSQFDNSIPRLAEARLIVSEYLNL 226

Query: 239 LGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQGRWL 298
           L N D++T+++ ++LKEE L+E L LIQ LDPRPG  I    +EYVIPDV V K QG W 
Sbjct: 227 LANHDFRTLIRTSRLKEEVLKESLALIQSLDPRPGQSINTGESEYVIPDVLVRKIQGHWT 286

Query: 299 VTINPDSVPKLKINQQYADLMRG--NNAESNYIRTNLQEAKWLIKSLESRNETLLKVAKC 356
           V +N DSVP+L+INQQYA L     N+++  +IR++LQEA+WLIKSLESRN+TLLKV +C
Sbjct: 287 VELNTDSVPRLQINQQYAALGSSARNDSDGQFIRSHLQEARWLIKSLESRNDTLLKVTRC 346

Query: 357 IVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSH 416
           IVE Q  FFE+GEE MKPMVL D+A AV+MHESTISRVTTQK++H+PRGIFELKYFFSSH
Sbjct: 347 IVEQQQAFFEHGEEFMKPMVLADIAQAVDMHESTISRVTTQKFLHSPRGIFELKYFFSSH 406

Query: 417 VSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLG 476
           VSTDNGGE SSTAIRAL++KL+AAENPAKPLSDSK+ +LL++ GI VARRT+AKYRESL 
Sbjct: 407 VSTDNGGEASSTAIRALVRKLIAAENPAKPLSDSKLTSLLSEHGIIVARRTVAKYRESLS 466

Query: 477 IAPSSQRKRLL 487
           I PS+QRK+L+
Sbjct: 467 IPPSNQRKQLV 477