Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., RNA polymerase sigma-54 factor from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  258 bits (660), Expect = 2e-73
 Identities = 161/499 (32%), Positives = 269/499 (53%), Gaps = 36/499 (7%)

Query: 6   QLKLGQQLA--MTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLDSVR 63
           +L L Q L+  ++PQ  Q I+LLQ+ T +L+  ++E LE NP LE               
Sbjct: 3   KLNLNQVLSQKLSPQQIQFIKLLQVPTAELEARVEEELEINPALE--------------- 47

Query: 64  MTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGSTGLALDDDAPI 123
              E   E ++  E    D+ D   K +    LE   + D       G      D++   
Sbjct: 48  ---EGKEEGDDAQEEVLADNYDEGNKEDKDINLEDYLSDDYGGYKMQGDGNYTPDEEDRE 104

Query: 124 YQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESL---RSD 180
               +  +L + L  QL      +  + I   LI +I+  GY+   LE I   L   ++ 
Sbjct: 105 MPLSSGTSLHEQLLSQLSFLRLDEHQKLIGKQLIGSIESDGYIRRDLEAIINDLAFSQNV 164

Query: 181 DIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPC-DTPWLEEARLLLSQYIDDL 239
           + +LDE+E V ++IQ FDP G+A+ +LQ+CL++QL      +   +++A  +++   D+ 
Sbjct: 165 ETDLDEVEEVLRKIQNFDPAGIAARSLQECLIIQLERKEHQEDEVVQKAIKVVTDCFDEF 224

Query: 240 GNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRI-AQDHAEYVIPDVSVYKEQGRWL 298
             + Y  ILK+  L EEDL+E++Q+I +L+P+PG         +Y+IPD  +    G+  
Sbjct: 225 TKKHYDKILKKCNLSEEDLKEVIQMITRLNPKPGGGSDGLMRTQYIIPDFLLNVVNGKPE 284

Query: 299 VTINPDSVPKLKINQQYADLMRGNNAES----------NYIRTNLQEAKWLIKSLESRNE 348
           +T+N  + P+L++++ Y+++                  ++++  L  AKW I +++ R +
Sbjct: 285 ITLNSRNAPELRVSRSYSEMFEAYEKSDKKDKKLKDTVSFVKQKLDAAKWFIDAIKQRQQ 344

Query: 349 TLLKVAKCIVEHQHDFFEYGEEA-MKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIF 407
           TLLK    I+++Q +FFE G+E  +KPM+L D+A  ++M  ST+SRV   K + T  G+F
Sbjct: 345 TLLKTMHAILDYQKEFFEEGDETKLKPMILKDIAERIDMDISTVSRVANSKAIQTEFGVF 404

Query: 408 ELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRT 467
            LKYFFS  +ST+ G + S+  ++++++KLV  E+  KPLSD K+  LL ++G  +ARRT
Sbjct: 405 PLKYFFSEGISTEGGEDVSNREVKSVLQKLVDNEDKRKPLSDDKLVKLLNEKGYNIARRT 464

Query: 468 IAKYRESLGIAPSSQRKRL 486
           +AKYRE L I  +  RK L
Sbjct: 465 VAKYREQLQIPVARLRKEL 483