Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., RNA polymerase, sigma 54 (sigma N) factor from Escherichia coli BL21

 Score =  609 bits (1570), Expect = e-179
 Identities = 305/491 (62%), Positives = 390/491 (79%), Gaps = 18/491 (3%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           MK  LQL+L QQLAMTPQLQQAIRLLQLSTL+LQQE+Q+ALESNPLLE  +  +E  +  
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDT-- 58

Query: 61  SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANT--GSTGLALD 118
             R T++S          E  D++D +E+ E+  EL +D +WD +Y+A T  G++G  +D
Sbjct: 59  --RETQDS----------ETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSGDYID 106

Query: 119 DDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLR 178
           D+ P+YQGETTQTLQDYL WQ++LTPFSD DR IA +++DA+DD GYLTV LE+I ES+ 
Sbjct: 107 DELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLEDILESMG 166

Query: 179 SDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQYIDD 238
            ++I++DE+EAV KRIQ+FDP GVA+ +L+DCLL+QL+ +   TPWLEEARL++S ++D 
Sbjct: 167 DEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDL 226

Query: 239 LGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQGRWL 298
           L N D++T+++ T+LKE+ L+E + LIQ LDPRPG  I     EYVIPDV V K  G W 
Sbjct: 227 LANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWT 286

Query: 299 VTINPDSVPKLKINQQYADLMRG--NNAESNYIRTNLQEAKWLIKSLESRNETLLKVAKC 356
           V +N DS+P+L+INQ YA +     N+ +S +IR+NLQ+AKWLIKSLESRN+TLL+V++C
Sbjct: 287 VELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRC 346

Query: 357 IVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSH 416
           IVE Q  FFE GEE MKPMVL D+A AVEMHESTISRVTTQKY+H+PRGIFELKYFFSSH
Sbjct: 347 IVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSH 406

Query: 417 VSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLG 476
           V+T+ GGE SSTAIRAL+KKL+AAENPAKPLSDSK+ +LL++QGI VARRT+AKYRESL 
Sbjct: 407 VNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLS 466

Query: 477 IAPSSQRKRLL 487
           I PS+QRK+L+
Sbjct: 467 IPPSNQRKQLV 477