Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., RNA polymerase sigma-54 factor from Acinetobacter radioresistens SK82

 Score =  395 bits (1014), Expect = e-114
 Identities = 227/498 (45%), Positives = 318/498 (63%), Gaps = 28/498 (5%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           MK S+ LK+   L++TPQLQQAIRLLQLS+L+L+QEIQ  LESNPLLE  ++++   +L 
Sbjct: 1   MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQLQLESNPLLEQIDDENSISTLS 60

Query: 61  SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGSTGLALDD- 119
           +   T+        ++E +   ++D      +  EL +DT WDEVY     ST L + + 
Sbjct: 61  NSNNTD--------IHELDQSLNAD-----HLPEELPVDTHWDEVYIHQ--STALEIPEF 105

Query: 120 DAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLRS 179
                    + +L+ +L  Q++L  FS +D+ IA  L+D++D  G+L   +EEI  S+++
Sbjct: 106 QEQEDNNHKSLSLKQHLLEQINLLHFSQIDQLIAYCLVDSLDQRGFLEAEIEEITASVQN 165

Query: 180 --------DDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLL 231
                   +++E DE+  V K IQ+ DP G  S NL +CL +QL       P +++A +L
Sbjct: 166 LLAEMGHEEEVEDDEVYVVLKHIQRLDPLGAGSRNLAECLRIQLEALS-SVPVIQDALIL 224

Query: 232 LSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVY 291
           L  Y   + N D   +LK+T L  E L+  + +++ L   PG     + + Y IPDV V 
Sbjct: 225 LEHYHLLIAN-DLGKLLKQTGLNTERLKSAINMLKTLKAYPGIEFEDESSNYQIPDVIVS 283

Query: 292 KEQGRWLVTINPDSVPKLKINQQYADLMR--GNNAESNYIRTNLQEAKWLIKSLESRNET 349
           K+   W V +N D +PKL+IN  YA ++R    + ++NY++  L EAK  IKS++ R++T
Sbjct: 284 KKDQIWHVQLNTDILPKLRINSFYAGMIRRADQSTDNNYLKDQLYEAKNFIKSIDERHKT 343

Query: 350 LLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFEL 409
           LLKVA CIVEHQ  FFE G E MKP++L +VA  V++HEST+SRVT+ KYM TPRG+FEL
Sbjct: 344 LLKVASCIVEHQRTFFEIGAEGMKPLILREVAEEVQLHESTVSRVTSNKYMLTPRGLFEL 403

Query: 410 KYFFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIA 469
           KYFFSSHV T +GGE SSTAIRA+IKKLV+ ENP KPLSD+ I  LL ++GI VARRT+A
Sbjct: 404 KYFFSSHVGTTSGGEASSTAIRAMIKKLVSNENPRKPLSDNSITNLLKEEGIDVARRTVA 463

Query: 470 KYRESLGIAPSSQRKRLL 487
           KYRESL I  SS RK L+
Sbjct: 464 KYRESLNIPSSSDRKVLI 481