Pairwise Alignments

Query, 241 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., Lipopolysaccharide export system ATP-binding protein LptB from Xanthobacter sp. DMC5

 Score =  139 bits (350), Expect = 5e-38
 Identities = 81/243 (33%), Positives = 139/243 (57%), Gaps = 8/243 (3%)

Query: 3   ILKAQHLAKSYKKRKVVSDVSLQVESGQIVGLLGPNGAGKTTSFYMIVGLVARDEGTITI 62
           +L+ + L KSY     V  VS  VE+GQ++ L+GPNGAGK+T F M+ G +  D GT+ I
Sbjct: 4   LLEVKDLMKSYGGVHAVRGVSFTVEAGQMLALIGPNGAGKSTCFNMLNGQIPPDAGTVRI 63

Query: 63  DDNDISILPMHSRSRMGIGYLPQEASIFRKLSVEDNIMAVLQTREELTHE-------ERQ 115
           +  DI  LP  +  R+G+G   Q  + F  ++V +N+   L +   L            +
Sbjct: 64  EGKDIKGLPPRAVWRLGVGRTFQITATFASMTVRENVQVALISFHGLISRVFGFAGAACR 123

Query: 116 DKLEDLLEEFHIQHIRKSAGMALSGGERRRVEIARALAANPQFILLDEPFAGVDPISVID 175
           ++ + LL    +    +     L+ G+ +R+E+A ALA  P+ +L+DEP AG+ P   ++
Sbjct: 124 EEADALLALVGLTTQAQRPCGELAYGDLKRLELAVALANQPRLLLMDEPTAGMAPRERVE 183

Query: 176 IKKI-IEHLRDRGLGVLITDHNVRETLDVCEKAYIVSQGRLIAEGTPQDVLNNEQVKQVY 234
           + ++  E  R +G+GVL T+H++    +  ++  ++++G+LIA GTP +V  + QV+ +Y
Sbjct: 184 LMRLTAEIARAKGIGVLFTEHDMDVVFEHADEVMVLNRGQLIARGTPAEVRRDPQVRAIY 243

Query: 235 LGE 237
           LGE
Sbjct: 244 LGE 246