Pairwise Alignments

Query, 241 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., Lipopolysaccharide export system ATP-binding protein LptB from Xanthobacter sp. DMC5

 Score =  148 bits (374), Expect = 1e-40
 Identities = 86/256 (33%), Positives = 143/256 (55%), Gaps = 22/256 (8%)

Query: 2   AILKAQHLAKSYKKRKVVSDVSLQVESGQIVGLLGPNGAGKTTSFYMIVGLVARDEGTIT 61
           A+L  Q+++  +   K +SDVS  V  G++  ++GPNGAGKT+    I G     +G + 
Sbjct: 16  ALLDVQNISLRFGGLKALSDVSFHVRPGELFSIIGPNGAGKTSMLNCISGRYTPSDGRVV 75

Query: 62  IDDNDISILPMHSRSRMGIGYLPQEASIFRKLSVEDNIMA----VLQT------------ 105
            D  D++ L  + R+ +GIG   Q  ++F  +SV DNIM     +L+             
Sbjct: 76  FDGRDVTKLKPNRRAEIGIGRTFQNLALFSHMSVLDNIMVGRHHLLKNNFFTGALYWIGG 135

Query: 106 --REELTHEERQDKLEDLLEEFHIQHIRKSAGMALSGGERRRVEIARALAANPQFILLDE 163
             +EEL H     K+E++++   IQH+RK+    LS G R+RVE+ARA+A  P+ ILLDE
Sbjct: 136 AQKEELEHRR---KVEEVIDFLDIQHVRKATAGTLSYGLRKRVELARAVALEPKLILLDE 192

Query: 164 PFAGVDPISVIDIKKIIEHLRDR-GLGVLITDHNVRETLDVCEKAYIVSQGRLIAEGTPQ 222
           P AG++     D+ + I  L +  G+ +++ +H++   +D+  +  ++  GR + EG P 
Sbjct: 193 PMAGMNLEEKEDMARYIVDLNEEWGMTIIMIEHDMGVVMDISHRVMVLDFGRKLVEGEPA 252

Query: 223 DVLNNEQVKQVYLGEQ 238
            VL +  V++ YLGE+
Sbjct: 253 AVLADPHVRKAYLGEE 268