Pairwise Alignments

Query, 179 a.a., lipopolysaccharide transport periplasmic protein LptA from Vibrio cholerae E7946 ATCC 55056

Subject, 185 a.a., predicted transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  137 bits (344), Expect = 1e-37
 Identities = 78/171 (45%), Positives = 111/171 (64%), Gaps = 3/171 (1%)

Query: 11  KYKVDMKRSHLSLIACLLA-STQAYALSTDREQPVYIDSDSQQLDMKSNRVTFLGDVKLK 69
           K+K +    +L L + LLA S  A+A++ D +QP++I+SD Q LDM+ N VTF G+V + 
Sbjct: 2   KFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVT 61

Query: 70  QGSININADKLIVIR-NAENGKIEEIEGYGNVATFSQLTDEGKTLYGEAKELYYKVRDDE 128
           QG+I INADK++V R   E GK E I+GYG  ATF Q+ D GK + G A +++Y++  D 
Sbjct: 62  QGTIKINADKVVVTRPGGEQGK-EVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDF 120

Query: 129 LVMINKAMLSQDDSEIRGSKIRYKISLQKLIADSDGKGRVSTVLQPQAIQE 179
           +V+   A L Q DS I+G KI Y +  QK+ A SD   RV+TVL P  +Q+
Sbjct: 121 VVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQD 171