Pairwise Alignments

Query, 187 a.a., LPS export ABC transporter periplasmic protein LptC from Vibrio cholerae E7946 ATCC 55056

Subject, 190 a.a., lipopolysaccharide ABC transporter permease from Pseudomonas simiae WCS417

 Score = 50.1 bits (118), Expect = 2e-11
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 2/139 (1%)

Query: 46  NLENISYDEQGIRNYVITSIHLDHYAKSGNTLFKAPILKVYREGTLQEWEITARRGILSK 105
           N  ++ +   G   Y +TS  ++H   S  TL   P L +YR GT   W +T++RG ++ 
Sbjct: 51  NAYSVQFLPDGKVQYEMTSDKVEHLKASEVTLLTNPDLNLYR-GTEFPWHVTSKRGEVNP 109

Query: 106 DQV-LTLYDDVLAKNLLPDSGFDTLTTSEMSIQLKSRDFWADKPVELRGPQFETHGQAMK 164
           D   + L D V        +    +T+S M++  + +    ++ V + G    + G+ MK
Sbjct: 110 DGTEVELIDSVRVARTDAQNRDTVITSSRMTVFPQKQYAQTEQDVRIDGAGGVSTGKGMK 169

Query: 165 GNFADHSAELYNQVQGRYE 183
               +    L + V+G+YE
Sbjct: 170 AYLKESRIHLLSNVRGQYE 188