Pairwise Alignments

Query, 187 a.a., LPS export ABC transporter periplasmic protein LptC from Vibrio cholerae E7946 ATCC 55056

Subject, 192 a.a., Lipopolysaccharide export system protein LptC from Alteromonas macleodii MIT1002

 Score = 75.9 bits (185), Expect = 4e-19
 Identities = 43/183 (23%), Positives = 89/183 (48%), Gaps = 6/183 (3%)

Query: 1   MSLSRI-VYVLLLFIASWSLYYLLGQEQDSKIQVAPNLELPMFSGENLENISYDEQGIRN 59
           +S+S + +  +L++I +W     + ++ +++     +   P +  +NL    Y++ G  N
Sbjct: 11  LSISALFILAMLMYIPTW-----MEEQPETQGNRENDALKPAYKAKNLTTTLYNQDGELN 65

Query: 60  YVITSIHLDHYAKSGNTLFKAPILKVYREGTLQEWEITARRGILSKDQVLTLYDDVLAKN 119
           + + +  ++HY + G  LF+ P   +Y E     W +TA  G L  ++++ L + V  +N
Sbjct: 66  HKVFAESMEHYDQLGFVLFQQPKYTLYTENASSPWVVTADEGTLYNNELIQLENQVNIEN 125

Query: 120 LLPDSGFDTLTTSEMSIQLKSRDFWADKPVELRGPQFETHGQAMKGNFADHSAELYNQVQ 179
              D    +++T  + I L+++   +D+PVE+ G Q+         N      EL + VQ
Sbjct: 126 QTGDDFVRSISTEYIQINLETKQMTSDQPVEILGTQYVILSNGFNANLRTQEYELLDHVQ 185

Query: 180 GRY 182
             Y
Sbjct: 186 TTY 188