Pairwise Alignments

Query, 258 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 388 a.a., ABC transporter, permease protein (cluster 9, phospholipid) from Variovorax sp. SCN45

 Score =  125 bits (315), Expect = 1e-33
 Identities = 92/263 (34%), Positives = 138/263 (52%), Gaps = 11/263 (4%)

Query: 1   MRWVSSVGQRTLAVSETF----GRASLMLFGALVGRPQ--PIRHFPLLVRQLYSIGVQSL 54
           +R  S  G R + V   F    G+ ++ L  ALV  P   P R F      LY  G  +L
Sbjct: 126 VRAFSHNGPRAMIVMRDFTGLLGQLAIDLC-ALVRAPHRGPWRDFS---GHLYQFGATAL 181

Query: 55  AIIIVSGLFIGMVLSLQGYVILVDYGAETSLGQMVALSLLRELGPVVTALLFAGRAGSAL 114
            I  + GL IG+VL+      L  YGAET +  ++ LSL+RELGPV+ A+L AGR+GSA+
Sbjct: 182 HITALVGLLIGVVLAYLISQQLRQYGAETFVVNILGLSLIRELGPVLAAVLIAGRSGSAI 241

Query: 115 TAEIGLMKATEQLSSLEMMAVDPLKRVIAPRFWAGVISMPLLAMIFMAVGIWGGQLVGVD 174
           TA+IG+M+ TE+L ++ +M +    R++ PR  A  I+MPL+++      + GG L    
Sbjct: 242 TAQIGVMRVTEELDAMRVMGIPHGFRLVMPRVLALAIAMPLISLWTSMAALAGGMLAADA 301

Query: 175 WKGIDHGSFWSAMQASVELGQDIGNSTIKCVVFAFTVTWIALFNGYDAIPTSEGISRATT 234
              I    F SA+  +V +  ++  +  K  VF   +  I  + G    P +E + R TT
Sbjct: 302 ALNISPSYFLSALPRAVPI-SNLWLAMAKSAVFGVMIALIGCYFGMKVKPNTESLGRGTT 360

Query: 235 RTVVHSSLAVLGLDFVLTALMFG 257
            +VV S  AV+ +D +   L  G
Sbjct: 361 SSVVTSITAVILVDALFAVLFKG 383