Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 946 a.a., RNA polymerase-associated protein RapA from Rhodanobacter sp000427505 FW510-R12

 Score =  613 bits (1582), Expect = e-179
 Identities = 377/977 (38%), Positives = 552/977 (56%), Gaps = 50/977 (5%)

Query: 3   FALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDVVD 62
           F  GQRWIS  E +LGLGTV+ ++ R V ++FA +   R YA   AP+ R  F  G  V 
Sbjct: 2   FVPGQRWISSAEPELGLGTVLRVEGRGVQVLFAKAGVLRPYAVDSAPLLRAEFRAGQRV- 60

Query: 63  SQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQIDR 122
           + +G +  VE+V     +  Y G        G  L E  L ++   ++  D+L  G+ D 
Sbjct: 61  AGKGIAFLVERVEIKDDLLIYRG-------EGRELHEGQLDDEQSVSQADDRLVGGRTDA 113

Query: 123 MDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVGLG 182
           +  F LR   L  + +  +SPM GL   R GL+PHQL +A     R  PRVLLADEVGLG
Sbjct: 114 VAQFELRLEGLQRRAEARRSPMWGLGAARIGLVPHQLRVAGIASARRPPRVLLADEVGLG 173

Query: 183 KTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERC--VEAFS 240
           KTIEAGMII +Q+ TGRA R+L+++P+TL +QW VEM+RRFNL F+I+DEERC  +E   
Sbjct: 174 KTIEAGMIIARQLATGRASRVLLLLPDTLVYQWFVEMLRRFNLSFAIYDEERCEALEQSG 233

Query: 241 EADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIE 300
           +A NPFE +Q V+    FL  S +   Q L+A WDLLVVDEAHHL W PE  S  Y ++E
Sbjct: 234 DAGNPFEDEQLVIADFGFLESSPKYARQLLDAPWDLLVVDEAHHLAWSPEAASPRYTMVE 293

Query: 301 ALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALF 360
            LA   PGV+LLTATPEQLGR  HFARLRLLD  R+ + E+++ E ++Y  ++     L 
Sbjct: 294 QLAAAIPGVILLTATPEQLGRSGHFARLRLLDPQRYGNLESYLAEADRYLALSKIADRLL 353

Query: 361 SGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVLF 420
            G+ L D  +  + E      V      L +  +E       +EL+  L+DRHGTGR +F
Sbjct: 354 DGQPLDDAQRAALAEAFHGDAV------LTARLAEPTRPDNARELLAALIDRHGTGRAMF 407

Query: 421 RNTRAAIKGFPVRNV--HLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQE 478
           RN RA + GFP R    HLLP       T    +A         E  A     P  I  +
Sbjct: 408 RNNRAGVGGFPQRRPEWHLLPANAVDDSTRQALLA---------EFHADIQQPPALIEVD 458

Query: 479 FEGEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHE 538
           +          D R++ L+  + A   +K L+I    +  L LE+ALR + G     FHE
Sbjct: 459 YAA--------DPRIDALVALLDAHPQDKFLLICRSQAKVLALEEALRTKSGAGVARFHE 510

Query: 539 GMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR 598
           G+SI++RD+ AAYFAQ + GA++L+CSEIGSEGRNFQFA++LV++DLP +PDLLEQRIGR
Sbjct: 511 GLSIVQRDRNAAYFAQPD-GARLLLCSEIGSEGRNFQFAHRLVLWDLPLDPDLLEQRIGR 569

Query: 599 LDRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAE---RLIPI 655
           LDRIGQK DID+++  + +++Q +LARW+ EG++AF  +   GR +   + E   RL   
Sbjct: 570 LDRIGQKHDIDIHILAVADSAQHVLARWYGEGIDAFRLSPADGRELLRRYGEPLTRLADE 629

Query: 656 LAAGG---GEELEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDG 712
            A G     +EL+ ++ E+   ++ L   +  GRD LLE+ ++    A ++ +  A+ D 
Sbjct: 630 HARGDDNRDQELDALLAETRASHEQLAVLIRGGRDHLLELAASRDLHADELQQAFAREDR 689

Query: 713 DTNLVTFALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSR 772
           D+    F   L +A G+H E+ G   L++ P +++   + PG      ++TF R  AL+R
Sbjct: 690 DSTRDAFVQRLLEAFGIHAEELGGQVLLLDP-QYLSTDALPGFAEGPQSVTFARAVALAR 748

Query: 773 EDMHFISWEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSG 832
           ED+  +  +HP+V G +DL +S   G  A   + +  LP  T LL+ V++++  A ++  
Sbjct: 749 EDLPLLRLDHPLVAGALDLALSGEQGNAA--FMVDDVLPPRTALLQAVFLLECVADRKLD 806

Query: 833 ISRFLPVSPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLA--SKLVSSVQHDVHRLIT 890
             RFLPV PI + +D R  + +     E   R+    N  +A   K +  +   V  ++ 
Sbjct: 807 AERFLPVLPIAVTVDTRLAERADFAPSEIALRKAGDRNIEVARYRKFLGKL---VPPMLE 863

Query: 891 ASETAVEPRVSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGY 950
            +E     R  A  ++A      +L++EL RL AL+AVN ++ +  I  +  +   L   
Sbjct: 864 RAEALAGARGQARIDEAVGLATTALDAELSRLRALRAVNRSVSEAGIAAVAAERTSLLAA 923

Query: 951 IAQAQYQLDSLRLIVVA 967
           + Q++ +LD++R +V A
Sbjct: 924 LPQSRLRLDAVRFVVSA 940