Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 1072 a.a., DISARM system SNF2-like helicase DrmD from Rhodanobacter sp000427505 FW510-R12

 Score =  124 bits (311), Expect = 3e-32
 Identities = 163/703 (23%), Positives = 302/703 (42%), Gaps = 97/703 (13%)

Query: 173 VLLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDE 232
           +L+AD+VGLGKTIEAG++I + +L  R   +L++ P +LQ +W +EM+ +F L F + D 
Sbjct: 167 LLIADDVGLGKTIEAGLVIQEMLLRHRVRTVLVICPASLQEKWRIEMLEKFGLDFCVVDT 226

Query: 233 ERCVEAFSEAD---NPFETQQYVLCSLDFLRKSR--QRFEQAL------EAEWDLLVVDE 281
               +   +     NP+ +   ++ S+D+ +     +     L        ++DLLVVDE
Sbjct: 227 AYIKQLRRDRGIHVNPWTSHPRLIASMDWAKSGEGLRAMRDVLPLLAGHPRKFDLLVVDE 286

Query: 282 AHHLE----WHPEKPSREYQVIEALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFY 337
           AH++      H    S+  + I +++      L LTATP     ES  + L LLD  RF 
Sbjct: 287 AHNIAPAAGAHYALESQRTRFIRSISPHFQHRLFLTATPHNGYTESFTSLLELLDDQRF- 345

Query: 338 DYEAFVKEEEQYAPV------ADAVTA----LFSGEKLS------DEAKNKITELLS--- 378
                + +E+Q + V      +D V A    L++  KL        + + KI + L+   
Sbjct: 346 -ARNILPDEKQLSQVMIRRLKSDLVDAEGKPLYAQRKLQALVIPYTDEERKIHQKLNDYC 404

Query: 379 ---EQDVEPLFKALESHASEDEIALARQELID------NLMDRHGTGRVLFRNTRAAIK- 428
              E+D E   KA  +  +     L ++ L        + +++H     +    R  ++ 
Sbjct: 405 ASREKDAE---KAGSTFGTSFINQLLKKRLFSSPAAFASTLEKHIAS--IANGARPKVQD 459

Query: 429 GFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFEGEESSWW- 487
               R +    L++   Y     V       +   +R  + L PE+  Q    +   W  
Sbjct: 460 AMAERILRKAILKVDEDYANDQEVENAQSEAVEEASRHTQPLTPEQ--QLLLNDLRQWAQ 517

Query: 488 ----QFDSRVNWLLEKVKAK-------RSEKILVIASRASTALQLEQALRER--EGIRAT 534
               Q DS+   ++E ++A           ++++     +T   + + L      G R  
Sbjct: 518 RAKNQTDSKARAIIEWLEANLRPDGEWSDRRVILFTEYRTTHSWMHEILASHGFGGERLG 577

Query: 535 VFHEGMSIIERD--KAAAYFAQEEGGAQVLICSEIGSEGRNFQ-FANQLVMFDLPFNPDL 591
           + H G++  ER+  KAA   + ++   ++L+ ++  SEG + Q   N L+  ++P+NP++
Sbjct: 578 LLHGGLTQEEREPIKAAFQASPKDSPVRILLATDAASEGIDLQNHCNCLIHLEIPYNPNV 637

Query: 592 LEQRIGRLDRIGQK-RDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAE 650
           +EQR GR+DR GQ+  ++ ++ P               E +        + RA   +   
Sbjct: 638 MEQRNGRIDRHGQRENEVLIWHPVDGGDKSREPVGGHGEDILRALRKLESMRADMGS--- 694

Query: 651 RLIPILAAGGGEELEVIIEESAKLNKTLKSQLEVGR-DRLLEMHSNGGEKAQQIAEQIAK 709
            + P++A     ++  +IE S K   T  ++ ++ +  R +       E+  ++ E++  
Sbjct: 695 -VNPVIA----PQMSGLIEGSLKDLDTRLAEAKIAKARRFVRAERELKERVAKLHERLLA 749

Query: 710 TDGDTNLVTFALSLFDAIGLHQEDRG--ENALVVTPAEHMM--VPSYPGL---------- 755
           T  D +L    + +    GL    R   E+  +    E  +  +PS  G           
Sbjct: 750 TQRDFHLTPDHIQMAVKTGLALAGRPPLESVTLAGAPEGSVFKIPSLSGSWLRCSEGLEH 809

Query: 756 PYEGA---TITFDRDTALSREDMHFISWEHPMVQGGIDLLMSE 795
           P+       ITFD   A  R+D+  +   H +VQ  + LL +E
Sbjct: 810 PFRKGFIRPITFDHAVAKGRDDVVLVHLNHRLVQMCLRLLRAE 852