Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., ATP-dependent RNA helicase Atu1833 from Sphingobium sp. HT1-2

 Score = 46.2 bits (108), Expect = 5e-09
 Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 3/106 (2%)

Query: 500 VKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYFAQEEGGA 559
           ++A+  +  ++  +R +T  +L ++L +R G ++   H  +    R      F   +G  
Sbjct: 237 LEAEDVQSAVIFCNRKTTVRELNKSL-QRHGFKSGEIHGDIDQASRIAELERF--RDGSV 293

Query: 560 QVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQK 605
            +L+ S++ + G + +  + +  FD P++PD    RIGR  R G K
Sbjct: 294 NILVASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAK 339