Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas sp. DMC3

 Score =  899 bits (2322), Expect = 0.0
 Identities = 488/962 (50%), Positives = 641/962 (66%), Gaps = 25/962 (2%)

Query: 6   GQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDVVDSQQ 65
           GQRWISD+E++LGLGTV+A D R +T+++ A+ E R YA  +AP+TRV F+ GD +   +
Sbjct: 8   GQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPGDSITHFE 67

Query: 66  GWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQIDRMDN 125
           GW + V+QV +  G+  Y G     E   V L E  LSN I+F    D+LFAGQID +  
Sbjct: 68  GWKMTVQQVDDVDGLMVYHGLNGQNEV--VTLPETQLSNFIQFRLASDRLFAGQIDPLPW 125

Query: 126 FVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTI 185
           F LRY  L +  +Q +S + GL G+RA  I HQL+IA EV  R APRVLLADEVGLGKTI
Sbjct: 126 FSLRYNTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVGLGKTI 185

Query: 186 EAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFSEADNP 245
           EAG++IH+Q+L+GRA R+LI+VPE LQHQWLVEM RRFNL  ++FDEER +E  S+A NP
Sbjct: 186 EAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIE--SDATNP 243

Query: 246 FETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIEALAEQ 305
           FE  Q  L +L++L    +  +    A WDL+VVDEAHHL WH +K S EY ++E LAE 
Sbjct: 244 FEDTQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDKASAEYSLVEQLAEV 303

Query: 306 TPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALFSGEKL 365
            PGVLLLTATPEQLG++SHFARLRLLD +RF+D  AF  E + Y PVA+AV  L    +L
Sbjct: 304 IPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESDNYRPVAEAVQELLDKGRL 363

Query: 366 SDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVLFRNTRA 425
           S EA   I   L  +  E L  A+    +E    L R+     L+DRHGTGRVLFRNTRA
Sbjct: 364 SAEAHKTIHGFLGNEG-EALLTAVNDGDTEASARLVRE-----LLDRHGTGRVLFRNTRA 417

Query: 426 AIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE--GEE 483
           A++GFP R +H  PL  P +Y         L   L   A     LYPE  FQ      EE
Sbjct: 418 AVQGFPERKLHPYPLPCPDEY---------LELPLGEHAE----LYPEVSFQAQPEASEE 464

Query: 484 SSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSII 543
             WW+FD RV WL++++K  +  K+LVI + A TA+ LE ALR R GI ATVFHEGM+I+
Sbjct: 465 ERWWKFDPRVEWLIDQLKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNIL 524

Query: 544 ERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIG 603
           ERD+AAAYFA EE GAQVLICSEIGSEGRNFQFA+ LV+FDLP +PDLLEQRIGRLDRIG
Sbjct: 525 ERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHHLVLFDLPSHPDLLEQRIGRLDRIG 584

Query: 604 QKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAAGGGEE 663
           QK  I+++VPYL  + Q  L +W+ E LNAF  TCPTG A+   F  RL+P+L      E
Sbjct: 585 QKHIIELHVPYLETSPQERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEADDGE 644

Query: 664 LEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTFALSL 723
            + +I+E+    + L+++L  GRDRLLE++S G  + + + E I + D    L  +  +L
Sbjct: 645 WQALIDEARAERERLEAELHTGRDRLLELNSGGAGEGEALVEAILEQDDQFALPIYMETL 704

Query: 724 FDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFISWEHP 783
           FDA G+  ED  ENAL++ P+E M+  S+P    EG TIT+DR+ ALSREDM FI+WEHP
Sbjct: 705 FDAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHP 764

Query: 784 MVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPVSPIR 843
           MVQGG+DL++S  +G  AV+L+KNKAL  GT+LLEL+YV +  AP+   + R+LP + +R
Sbjct: 765 MVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALR 824

Query: 844 ILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPRVSAI 903
            L+DA GNDLS +V FE+ N QL  V R  A+K + + +  +   I A E  + PR +  
Sbjct: 825 CLLDANGNDLSPRVSFETLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKIAPRHAER 884

Query: 904 REQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLDSLRL 963
             +A+R +    + EL RL AL+AVNP +RD E+E L  Q ++    + +A  +L+++R+
Sbjct: 885 VAEARRRLAADTDEELARLTALQAVNPTVRDSELEALRTQREQGLAMLDKAALRLEAIRV 944

Query: 964 IV 965
           +V
Sbjct: 945 LV 946