Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 978 a.a., helicase SNF2 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 54.3 bits (129), Expect = 4e-11
 Identities = 98/452 (21%), Positives = 176/452 (38%), Gaps = 78/452 (17%)

Query: 175 LADEVGLGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFD--- 231
           LAD++GLGKT++   ++  +   G     L+V+P +L + W+ E  ++F  +  I +   
Sbjct: 543 LADDMGLGKTVQTLAMLQHRKENGAESASLLVMPTSLVYNWVNE-AQKFTPNLRILNYTG 601

Query: 232 --EERCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHP 289
              ++ VE FS  D        VL S   +R   +  +      +D +++DE+  ++   
Sbjct: 602 TYRDKNVELFSNYD-------VVLTSYGIVRLDAELLKTYY---FDYIILDESQAIKNPD 651

Query: 290 EKPSREYQVIEALAEQTPGVLLLTATPEQ-----LGRESHFARLRLLDADRFYDYEAFVK 344
              SR  + +++        L+LT TP +     L  +  F    LL    F+  E F+K
Sbjct: 652 SNTSRSVRSLKSRHR-----LILTGTPVENSTMDLWSQMSFINPGLLGNQHFFRNE-FLK 705

Query: 345 --EEEQYAPVADAVTALFSGEKLSDEAKNKITELLSEQDVEPLFKAL---ESHASEDEIA 399
             E+E+       + AL     L    K+++ + L E+     F  +   + HA E+  +
Sbjct: 706 PIEKEKDEQKTRRLHALIKPFILR-RHKSQVAKELPEKIEHTTFCKMTEEQEHAYEETKS 764

Query: 400 LARQELIDNLMDRHGTGRVLFRNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGK 459
             R +++ +L + +G G   F   +   K   +R +   PL   + Y           GK
Sbjct: 765 YYRNKILTSL-EENGPGNTQFMLLQGLTK---LRQIANHPLMTDAGYEGE-------SGK 813

Query: 460 LTPEARAMKMLYPEEIFQEFEGEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTAL 519
           L    R  K +                                 +  K+L+ +       
Sbjct: 814 LKEVLRMTKNV-------------------------------VGKGHKVLIFSQFVKHLE 842

Query: 520 QLEQALREREGIRATVFHEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQ 579
            + +AL E+ GI  T          R +    F  +E     LI  + G  G N   A+ 
Sbjct: 843 IIRKALDEK-GITYTYLDGNTK--NRHEQVERFQADESIRVFLISLKAGGVGLNLTAADY 899

Query: 580 LVMFDLPFNPDLLEQRIGRLDRIGQKRDIDVY 611
           + + D  +NP +  Q + R  RIGQ+  +  Y
Sbjct: 900 VFILDPWWNPAVEAQAVDRAHRIGQQNTVFTY 931