Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 494 a.a., ATP-dependent RNA helicase RhlE from Methylophilus sp. DMC18

 Score = 44.7 bits (104), Expect = 2e-08
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 500 VKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYFAQEEGGA 559
           +K  + E++LV       A +L + L  ++GI A   H   S   R  A A F  + GG 
Sbjct: 249 IKQHQWEQVLVFTRTKHGANRLAEKL-VKDGIPAMAIHGNKSQNARTAALAEF--KAGGI 305

Query: 560 QVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIG 603
             L+ ++I + G +     Q+V F+LP  P+    RIGR  R G
Sbjct: 306 TALVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAG 349