Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 874 a.a., ATP-dependent helicase from Magnetospirillum magneticum AMB-1

 Score = 46.2 bits (108), Expect = 9e-09
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 7/119 (5%)

Query: 493 VNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYF 552
           V W+   + +K SEK+++ A       QL+ A  +     A V     S   R KA   F
Sbjct: 665 VTWVEHFLVSKPSEKLIIFAHHIEVQQQLQVAFSD-----ALVIDGKTSATARRKAVKAF 719

Query: 553 AQEEGGAQVLICS-EIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRDIDV 610
            Q EGG +++ICS            A  ++  +L + P  +EQ   R  RIGQ   +++
Sbjct: 720 -QAEGGPRLIICSLRAAQTALTLTRARHVLFVELDWTPSGIEQAADRAHRIGQDGQVEI 777



 Score = 30.0 bits (66), Expect = 7e-04
 Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 22/149 (14%)

Query: 173 VLLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQW---LVEMMRRFNLHFSI 229
           ++LADE GLGKT+ A   +        A   +I+ P   +  W     + +    +H   
Sbjct: 341 IILADEQGLGKTLTALAALE----IADAWPAVIITPAVAKLNWADEAADWLPHRRIHVIG 396

Query: 230 FDEERCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHP 289
                     S+A+      +    +LD L          +  +   LV DEA +L+ + 
Sbjct: 397 VGARAAGVPLSDAEIIILNYEVTKANLDAL----------IAIQPQALVCDEAQYLKTY- 445

Query: 290 EKPSREYQVIEALAEQTPGV--LLLTATP 316
              S   + ++AL E+T     LL+T TP
Sbjct: 446 --NSARTEAVKALLEKTKPTIRLLMTGTP 472