Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., ATP-dependent RNA helicase SrmB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 45.1 bits (105), Expect = 1e-08
 Identities = 44/202 (21%), Positives = 84/202 (41%), Gaps = 5/202 (2%)

Query: 489 FDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKA 548
           F+ +V  L   +K   + + +V   +     +L + LR   GI        M+ I+R++ 
Sbjct: 232 FEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLR-LAGINNCYLEGEMAQIKRNEG 290

Query: 549 AAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRDI 608
                  +G   VL+ +++ + G +    + ++ FD+P + D    RIGR  R G+K   
Sbjct: 291 IKRLT--DGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTA 348

Query: 609 DVYVPYLTETSQAILARWFQEGLNA--FAETCPTGRAVYDAFAERLIPILAAGGGEELEV 666
              V          + R+ +E L A    E  PT RA  +    +    + A   E+ + 
Sbjct: 349 ISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPSEKLTGKPSKKVLAKRAEKKKE 408

Query: 667 IIEESAKLNKTLKSQLEVGRDR 688
             +E  ++ K  +    +G+ R
Sbjct: 409 KEKEKPRVKKRHRDTKNIGKRR 430