Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 968 a.a., RNA polymerase associated protein RapA (EC 3.6.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1251 bits (3238), Expect = 0.0
 Identities = 600/969 (61%), Positives = 780/969 (80%), Gaps = 3/969 (0%)

Query: 1   MSFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDV 60
           M F LGQRWISDTES+LGLGTVVA+DARTVTL+F ++ ENR+YARSD+PVTRV+FN GD 
Sbjct: 1   MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT 60

Query: 61  VDSQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQI 120
           + S +GW L +++V E+ G+  Y+GTR+DTEE+ V LRE+ L +++ F+KPQD+LFAGQI
Sbjct: 61  ITSHEGWQLHIDEVKEENGLLVYVGTRLDTEETNVTLREVLLDSKLVFSKPQDRLFAGQI 120

Query: 121 DRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG 180
           DRMD F LRYRA   Q +Q++ P  GL G R  LIPHQL IAH+VGRRHAPRVLLADEVG
Sbjct: 121 DRMDRFALRYRARKFQSEQYRMPYSGLRGQRTNLIPHQLNIAHDVGRRHAPRVLLADEVG 180

Query: 181 LGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFS 240
           LGKTIEAGMI+HQQ+L+G AER+LI+VPETLQHQWLVEM+RRFNL F++FD+ER  EA  
Sbjct: 181 LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYTEAQH 240

Query: 241 EADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIE 300
           +A NPFET+Q V+CSLDF R+++QR E   +AEWDLLVVDEAHHL W  + PSREY  IE
Sbjct: 241 DAYNPFETEQLVICSLDFARRNKQRLEHLCDAEWDLLVVDEAHHLVWSTDAPSREYMAIE 300

Query: 301 ALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALF 360
            LAE+ PGVLLLTATPEQLG ESHFARLRLLD +RF+D+E FV+E++ Y PVADAV  L 
Sbjct: 301 QLAERVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQKNYRPVADAVAMLL 360

Query: 361 SGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVLF 420
           +G KLS++  N++ +L+ EQD+EPL +A  +++  D+   AR EL+  LMDRHGT RVLF
Sbjct: 361 AGNKLSNDELNRLGDLIGEQDIEPLLQA--ANSDRDDAQAARDELVSMLMDRHGTSRVLF 418

Query: 421 RNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE 480
           RNTR  +KGFP R +H + L +P+QY T+++V+G++G + +PE RA  MLYPE+I+QEFE
Sbjct: 419 RNTRNGVKGFPKRELHTVKLPLPTQYQTAIKVSGIMGARKSPEDRARDMLYPEQIYQEFE 478

Query: 481 GEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM 540
           G+  +WW FD RV WL+  + + RS+K+LVI ++A+TALQLEQ LREREGIRA VFHEGM
Sbjct: 479 GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGM 538

Query: 541 SIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD 600
           SIIERD+AAA+FA+E+ GAQVL+CSEIGSEGRNFQFA+ LVMFDLPFNPDLLEQRIGRLD
Sbjct: 539 SIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLD 598

Query: 601 RIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAAGG 660
           RIGQ  DI ++VPYL +T+Q++L RW+ EGL+AF  TCPTGRA+YD+    LI  LAA  
Sbjct: 599 RIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRAIYDSAYASLINYLAAPE 658

Query: 661 GEE-LEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTF 719
             +  + +I+   + ++ LK+QLE GRDRLLE+HSNGGEKAQQ+A+ I + D DTNL+ F
Sbjct: 659 ETDGFDDLIKSCREQHEALKAQLEQGRDRLLEIHSNGGEKAQQLAQSIEEQDDDTNLIAF 718

Query: 720 ALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFIS 779
           A++LFD +G++Q+DRG+N +V+TP++HM+VP +PGLP +G TITF+RD ALSRED  FI+
Sbjct: 719 AMNLFDIVGINQDDRGDNLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFIT 778

Query: 780 WEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPV 839
           WEHP+++ G+DL++S   G+  +SLLKNKALPVGT+L+ELVYVV+AQAPK+  ++RFLP 
Sbjct: 779 WEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELVYVVEAQAPKQLQLNRFLPP 838

Query: 840 SPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPR 899
           +P+R+L+D  GN+L++QVEFE+FNRQLS VNRH  SKLV++VQ DVH ++   ET +E  
Sbjct: 839 TPVRMLLDKNGNNLAAQVEFETFNRQLSAVNRHTGSKLVNAVQQDVHAILQLGETQIEKS 898

Query: 900 VSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLD 959
             A+ + A+R+  + L+ EL RL AL+AVNPNIRD+E+  +D   +++   + QA ++LD
Sbjct: 899 ARALIDNARREADEKLSGELSRLEALRAVNPNIRDDELAAIDSNRQQVLESLNQAGWRLD 958

Query: 960 SLRLIVVAH 968
           +LRLIVV H
Sbjct: 959 ALRLIVVTH 967