Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 968 a.a., ATP-dependent helicase HepA (NCBI) from Escherichia coli BW25113

 Score = 1243 bits (3216), Expect = 0.0
 Identities = 598/969 (61%), Positives = 776/969 (80%), Gaps = 3/969 (0%)

Query: 1   MSFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDV 60
           M F LGQRWISDTES+LGLGTVVA+DARTVTL+F ++ ENR+YARSD+PVTRV+FN GD 
Sbjct: 1   MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT 60

Query: 61  VDSQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQI 120
           + S  GW +QVE+V E+ G+ TY+GTR+DTEESGVALRE+FL +++ F+KPQD+LFAGQI
Sbjct: 61  ITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQI 120

Query: 121 DRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG 180
           DRMD F LRYRA     +Q + P  GL G R  LIPHQL IAH+VGRRHAPRVLLADEVG
Sbjct: 121 DRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG 180

Query: 181 LGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFS 240
           LGKTIEAGMI+HQQ+L+G AER+LI+VPETLQHQWLVEM+RRFNL F++FD+ER  EA  
Sbjct: 181 LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH 240

Query: 241 EADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIE 300
           +A NPF+T+Q V+CSLDF R+S+QR E   EAEWDLLVVDEAHHL W  + PSREYQ IE
Sbjct: 241 DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300

Query: 301 ALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALF 360
            LAE  PGVLLLTATPEQLG ESHFARLRLLD +RF+D+  FV+E++ Y PVADAV  L 
Sbjct: 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLL 360

Query: 361 SGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVLF 420
           +G KLS++  N + E++ EQD+EPL +A  +++  ++   ARQEL+  LMDRHGT RVLF
Sbjct: 361 AGNKLSNDELNMLGEMIGEQDIEPLLQA--ANSDSEDAQSARQELVSMLMDRHGTSRVLF 418

Query: 421 RNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE 480
           RNTR  +KGFP R +H + L +P+QY T+++V+G++G + + E RA  MLYPE I+QEFE
Sbjct: 419 RNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFE 478

Query: 481 GEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM 540
           G+ ++WW FD RV WL+  + + RS+K+LVI ++A+TALQLEQ LREREGIRA VFHEGM
Sbjct: 479 GDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGM 538

Query: 541 SIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD 600
           SIIERD+AAA+FA+E+ GAQVL+CSEIGSEGRNFQFA+ +VMFDLPFNPDLLEQRIGRLD
Sbjct: 539 SIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLD 598

Query: 601 RIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAAGG 660
           RIGQ  DI ++VPYL +T+Q++L RW+ EGL+AF  TCPTGR +YD+    LI  LA+  
Sbjct: 599 RIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPD 658

Query: 661 GEE-LEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTF 719
             E  + +I+   + ++ LK+QLE GRDRLLE+HSNGGEKAQ +AE I + D DTNL+ F
Sbjct: 659 QTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAF 718

Query: 720 ALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFIS 779
           A++LFD IG++Q+DRG+N +V+TP++HM+VP +PGL  +G TITFDR+ AL+RED  FI+
Sbjct: 719 AMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFIT 778

Query: 780 WEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPV 839
           WEHP+++ G+DL++S   G+  +SLLKNKALPVGT+L+EL+YVV+AQAPK+  ++RFLP 
Sbjct: 779 WEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPP 838

Query: 840 SPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPR 899
           +P+R+L+D  GN+L++QVEFE+FNRQL+ VNRH  SKLV++VQ DVH ++   E  +E  
Sbjct: 839 TPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKS 898

Query: 900 VSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLD 959
             A+ + A+ +  + L++EL RL AL+AVNPNIRD+E+  ++   +++   + QA ++LD
Sbjct: 899 ARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLD 958

Query: 960 SLRLIVVAH 968
           +LRLIVV H
Sbjct: 959 ALRLIVVTH 967