Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 960 a.a., Superfamily II DNA/RNA helicases, SNF2 family from Kangiella aquimarina DSM 16071

 Score = 87.8 bits (216), Expect = 3e-21
 Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 8/175 (4%)

Query: 173 VLLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDE 232
           V+LADEVGLGKTIEAG+++  Q    R  ++LI+ P +L+ QW  E++ +FNL   + D 
Sbjct: 58  VVLADEVGLGKTIEAGLVL-CQYWAERKRKLLIICPASLRRQWAQELLDKFNLPSLVLD- 115

Query: 233 ERCVEAFSEAD--NPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPE 290
            R  +   E    NP   +Q V+ S  +  +   R    +   WDL+V+DEAH L     
Sbjct: 116 ARAYKQLQEQGVYNPLNNKQIVIMSYHYAARLEDRL---VGESWDLVVIDEAHKLRNAHR 172

Query: 291 KPSREYQVIEALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKE 345
           + ++  Q +   A      LLLTATP Q      +    L+D   F D +AF K+
Sbjct: 173 ESNKMGQALRR-ALNGRKKLLLTATPLQNSLMELYGMSTLIDEHIFGDDKAFRKQ 226



 Score = 60.1 bits (144), Expect = 7e-13
 Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 546 DKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQK 605
           D+  A     +  A+++I +E  +EG N QF + L+ +DLP+NP  +EQRIGR  R GQK
Sbjct: 488 DRRTALIDYFKDNAEIMIATEAAAEGVNLQFCSLLINYDLPWNPQRVEQRIGRCHRYGQK 547

Query: 606 RDIDVYVPYLTETSQA 621
            D+ V + +L + + A
Sbjct: 548 FDV-VVINFLNKRNYA 562