Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., Superfamily II DNA and RNA helicases from Kangiella aquimarina DSM 16071

 Score = 45.8 bits (107), Expect = 6e-09
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 504 RSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYFAQEEGGAQVLI 563
           R +++LV       A +L   L +R GI+AT  H G S   R++A A F  + G   VL+
Sbjct: 242 RWDQLLVFVRTRRGANRLSVDLDKR-GIKATAIHGGKSQGARNRALAEF--KSGEVTVLV 298

Query: 564 CSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQK 605
            +++ + G + +    ++ +DLP   +    RIGR  R G+K
Sbjct: 299 ATDVAARGLDIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEK 340