Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 1056 a.a., DEAD/DEAH box helicase family protein from Fusobacterium nucleatum SB010

 Score = 44.7 bits (104), Expect = 3e-08
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query: 561 VLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRD 607
           +LI ++  SEG+N Q  + ++ FD+ +NP  L QR GR+DRIG + +
Sbjct: 768 ILIATDCISEGQNLQDCDTVINFDIQWNPVSLIQRFGRIDRIGSENN 814



 Score = 38.9 bits (89), Expect = 2e-06
 Identities = 79/362 (21%), Positives = 137/362 (37%), Gaps = 61/362 (16%)

Query: 174 LLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEE 233
           ++AD VGLGKT EA  +I  +    R + +L++ P  L   W      R N   S   E 
Sbjct: 261 IIADSVGLGKTFEALAVI--KYFEIRGDNVLVLTPAKLYDNW---NSFRGNYKDSFLKEV 315

Query: 234 RCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPE--- 290
              +     D         L     + KS Q   +     +DL+V+DE+H+     +   
Sbjct: 316 FNYKVMFHTD---------LSRYKGMSKSGQDLSRFDWGNYDLVVIDESHNFRNRKDRYD 366

Query: 291 --------KPSREYQVIEALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAF 342
                   + +R  Q +    +    VLLL+ATP          +L ++ +D    +   
Sbjct: 367 ENDLLIMTRYARLLQDVIKKGKNNTKVLLLSATPVNNSLVDLKNQLSIITSDIDSKFSDE 426

Query: 343 VKEEEQYAPVADAVTALFSGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALAR 402
             +  +Y     A+ A+   EK  +  KN++ + L        +K LE       + ++R
Sbjct: 427 GIQSIEYVLRKSAI-AINQWEKEKNHDKNQLLDNLPSD----FYKLLEM------LTISR 475

Query: 403 -QELIDNLMDRHGTGRVLFRN----------TRAAIKGFPVRNVHLLPLEI----PSQ-- 445
            ++ I N       G+   +N              +  F   N  L  L +    P++  
Sbjct: 476 SRKHITNYYGDSNVGKFPKKNKPETYYPEIDIEEELLKFKDANEWLEELNLSVYTPTKYI 535

Query: 446 -------YTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFEGEESSWWQFDSRVNWLLE 498
                  YT    + G  GGKL  + ++  M+     F  F+  ESS + F   +  +LE
Sbjct: 536 KSKYIPLYTKKYNLIGKRGGKLDFQTQSKGMIVLHR-FNLFKRLESSVYSFAETLKRMLE 594

Query: 499 KV 500
           ++
Sbjct: 595 RI 596



 Score = 29.6 bits (65), Expect = 0.001
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 905 EQAQRDMQQSLNSELERL---LALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLDSL 961
           E +     ++L   LER+   + +   N  I DE+IE+LD++  E T Y+ + +YQ+D  
Sbjct: 579 ESSVYSFAETLKRMLERINRTIEILEKNGTI-DEDIEILDEEEIENTSYV-EGKYQIDVK 636

Query: 962 RLIVVAH 968
            L + A+
Sbjct: 637 HLRIGAY 643