Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Erwinia tracheiphila SCR3

 Score = 45.4 bits (106), Expect = 1e-08
 Identities = 36/177 (20%), Positives = 80/177 (45%), Gaps = 7/177 (3%)

Query: 432 VRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMK----MLYPEEIFQEFEGEESSWW 487
           + +V  +  +IP  + T++  A M         R MK    +     I    +  +S W 
Sbjct: 167 IEDVETIMAQIPEGHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSITTRPDISQSYWT 226

Query: 488 QFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDK 547
            +  + + L+  ++A+  +  ++     +  L++ +AL ER G  +   +  M+   R++
Sbjct: 227 AYGRKTDALVRFLEAEDFDAAIIFVRTKNATLEVAEAL-ERSGYNSAALNGDMNQALREQ 285

Query: 548 AAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQ 604
                  ++G   +LI +++ + G + +  + +V FD+P + +    RIGR  R G+
Sbjct: 286 TLERL--KDGRLDILIATDVAARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAGR 340