Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 858 a.a., DEAD/DEAH box helicase from Erwinia tracheiphila SCR3

 Score = 48.1 bits (113), Expect = 2e-09
 Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 20/165 (12%)

Query: 167 RRHAPRVLLADEVGLGKTIEAGMIIHQQVLTGRAER-ILIVVPETLQHQWLVEMMRRFNL 225
           R H+   +LAD++GLGKTI+    +  +   GR +R  LIVVP TL + W+ E  R    
Sbjct: 410 RAHSLSGVLADDMGLGKTIQTLAHLLSEKDGGRLDRPSLIVVPTTLVYNWMQEAER---- 465

Query: 226 HFSIFDEERCVEAFSEADNPFETQQY--VLCSLDFLRKSRQRFEQALEAEWDLLVVDEAH 283
            F+       +      D   + +QY  VL +   L + +    Q L   + LL++DEA 
Sbjct: 466 -FAPTLRVLALTGPQRKDFYGQIEQYDVVLTTYSLLWRDQ---PQLLSYRYHLLILDEAQ 521

Query: 284 HLEWHPEKPSREYQVIEALAEQTPGVLLLTATPEQLGRESHFARL 328
           +++      SR   VI AL  +    L LT TP     E+H   L
Sbjct: 522 YVK---NSASRASSVIRALKARHR--LCLTGTP----LENHLGEL 557



 Score = 30.0 bits (66), Expect = 7e-04
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 562 LICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRDIDVY 611
           LI  ++G  G N   A+ ++ +D  +NP    Q   R  R+GQ + + VY
Sbjct: 760 LISLKVGGVGLNLTAADTVIHYDPWWNPAAENQASDRAWRLGQDKPVFVY 809